View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17401_low_9 (Length: 361)
Name: NF17401_low_9
Description: NF17401
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17401_low_9 |
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Alignment Details
Target: chr4 (Bit Score: 181; Significance: 1e-97; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 181; E-Value: 1e-97
Query Start/End: Original strand, 1 - 209
Target Start/End: Original strand, 33120043 - 33120251
Alignment:
| Q |
1 |
tgtcgttgagacgttacagagtgagcgatctttggttagctgttggaagcatttgaggagcaggacagacccaaggtctattgacttggtctagtgaccg |
100 |
Q |
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| T |
33120043 |
tgtcgttgagacattacagagtgaacgatatttggctagccgttggaagcatttgaggagcaggacagacccaaggtctattgacttggtctagtgaccg |
33120142 |
T |
|
| Q |
101 |
tcttcggctcaagatgtttggtgggcattgttagtgtgaattccagaacaatttcccttccgactgttccgttgtttagagtgattactttgtatgatgt |
200 |
Q |
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| T |
33120143 |
tcttcggctcaagatgtttggtgggcattgttagtgtgaattccagaacaatttcccttccggttgttccgttgtttagagtgattactttgtatgatgt |
33120242 |
T |
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| Q |
201 |
aagtatgag |
209 |
Q |
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||||||||| |
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| T |
33120243 |
aagtatgag |
33120251 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 230 - 337
Target Start/End: Original strand, 33120392 - 33120499
Alignment:
| Q |
230 |
gcaaagaattaagttccacaatatgaggaaagcatgtggattgcgtccttgagatgaatgtaattgtcggtgttatacatgtggctcttgtggaacttgt |
329 |
Q |
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||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
33120392 |
gcaaagaattaagttccacaatacgaggaaagcatgtggattgcgtccttgagatgaatgtaattgtcggtgttatacatatggctcttgtggaacttgt |
33120491 |
T |
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| Q |
330 |
agcacttc |
337 |
Q |
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| T |
33120492 |
agcacttc |
33120499 |
T |
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