View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17402_high_12 (Length: 375)
Name: NF17402_high_12
Description: NF17402
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17402_high_12 |
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Alignment Details
Target: chr4 (Bit Score: 317; Significance: 1e-179; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 317; E-Value: 1e-179
Query Start/End: Original strand, 31 - 351
Target Start/End: Original strand, 42445377 - 42445697
Alignment:
| Q |
31 |
caagcactattgacagaaccattgtggcaacagcagtgtttggaaatggggaagaatttgagggcgaatctgttttccagccttccgatttctctccaac |
130 |
Q |
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| T |
42445377 |
caagcactattgacagaaccattgtggcaacagcagtgcttggaaatggggaagaatttgagggcgaatctgttttccagccttccgatttctctccaac |
42445476 |
T |
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| Q |
131 |
actgttgcccttagcatatgcaggaataaatggcaaagtagaatcttcattttgtgctaatggatccttgagtgacattgacttcagaggaaaggttgtt |
230 |
Q |
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| T |
42445477 |
actgttgcccttagcatatgcaggaataaatggcaaagtagaatcttcattttgtgctaatggatccttgagtgacattgacttcagaggaaaggttgtt |
42445576 |
T |
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| Q |
231 |
ttgtgtgagaggggagggggtataggaagaattgccaaaggacaggaagtacaaagagcaggtggtgccgccatgattctcatgaatgatgaactcaatg |
330 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42445577 |
ttgtgtgagaggggagggggtataggaagaattgccaaaggacaggaagtacaaagagcaggtggtgccgccatgattctcatgaatgatgaactcaatg |
42445676 |
T |
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| Q |
331 |
gtttcagtctctcagctgatg |
351 |
Q |
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||||||||||||||||||||| |
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| T |
42445677 |
gtttcagtctctcagctgatg |
42445697 |
T |
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