View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17402_high_19 (Length: 364)
Name: NF17402_high_19
Description: NF17402
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17402_high_19 |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 321; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 321; E-Value: 0
Query Start/End: Original strand, 21 - 364
Target Start/End: Original strand, 25011362 - 25011706
Alignment:
| Q |
21 |
catcatcattgtaacttcactgttattggggaaaaaacaaaagctcaagaaacatagtagattgttgtcttgctacaaaaagattgtaaacaaattccac |
120 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25011362 |
catcgtcattgtaacttcactgttattggggaaaaaacaaaagctcaagaaacatagtagattgttgtcttgctacaaaaagattgtaaacaaattccac |
25011461 |
T |
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| Q |
121 |
taagctggtgaaactagtatatctgaaa-cacgttgctttgtcaaattatcgtttcgtgtaagtgctatacactattcgaagaattccacaggattgaag |
219 |
Q |
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|||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
25011462 |
taagctggtgaaactagtatatctgaaaacacgttgctttgtcaaattatcgtttcgaaaaagtgctatacactattcgaagaattccacaggattgaag |
25011561 |
T |
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| Q |
220 |
agtaagtttgaagagaaattattgaaaccgtcaagttgagtactcacagagtgaagaatccctttggttgtaacatcaaatgcacctgcagtaccaccag |
319 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25011562 |
agtaagtttgaagagaaattattgaaaccgtcaagttgagtactcacagagtgaagaatccctttggttgtaacatcaaatgcacctgcagtaccaccag |
25011661 |
T |
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| Q |
320 |
cagcactgatccagtcaacgatcctctgcctgtgtgcatcttgat |
364 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25011662 |
cagcactgatccagtcaacgatcctctgcctgtgtgcatcttgat |
25011706 |
T |
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