View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17402_high_27 (Length: 349)
Name: NF17402_high_27
Description: NF17402
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17402_high_27 |
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Alignment Details
Target: chr8 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 7 - 169
Target Start/End: Original strand, 12933822 - 12933984
Alignment:
| Q |
7 |
actgcatttcttcatggagatttggaagaggagatttatatggagcaaccagaaggatttgaagtag-ctggaaagaaacacatggtgtgcaaattgaat |
105 |
Q |
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| T |
12933822 |
actgcatttcttcatggagatttagatgaagagatctacatggttcaaccagaaggatttg-agaagactcgaaaggagcacttggtttgcaaattgaag |
12933920 |
T |
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| Q |
106 |
aagagtctttatggattgaagcaggcaccaaggcagtggtacatgaagtttgattcattcatga |
169 |
Q |
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| T |
12933921 |
aagagcttgtatggattaaaacaagcaccaagacaatggtataagaaatttgactcgttcatga |
12933984 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 19 - 56
Target Start/End: Original strand, 36999937 - 36999974
Alignment:
| Q |
19 |
catggagatttggaagaggagatttatatggagcaacc |
56 |
Q |
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| T |
36999937 |
catggtgacttggaagaggagatttatatggagcaacc |
36999974 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 7 - 169
Target Start/End: Complemental strand, 28608783 - 28608621
Alignment:
| Q |
7 |
actgcatttcttcatggagatttggaagaggagatttatatggagcaaccagaaggatttgaagtag-ctggaaagaaacacatggtgtgcaaattgaat |
105 |
Q |
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| T |
28608783 |
actgcatttcttcatggagatttagatgaagagatctacatggttcaaccagaaggattt-aagaagactcgaaaggagcacttggtttgcaaattgaag |
28608685 |
T |
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| Q |
106 |
aagagtctttatggattgaagcaggcaccaaggcagtggtacatgaagtttgattcattcatga |
169 |
Q |
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| T |
28608684 |
aagagcttgtatggattaaaacaagcaccaagacaatggtataagaaatttgactcgttcatga |
28608621 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 7 - 146
Target Start/End: Original strand, 14177092 - 14177231
Alignment:
| Q |
7 |
actgcatttcttcatggagatttggaagaggagatttatatggagcaaccagaaggatttgaagtag-ctggaaagaaacacatggtgtgcaaattgaat |
105 |
Q |
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| T |
14177092 |
actgcatttcttcatggagatttagatgaagagatctacatggttcaaccagaaggatttg-agaagactcgaaaggagcacttggtttgcaaattgaag |
14177190 |
T |
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| Q |
106 |
aagagtctttatggattgaagcaggcaccaaggcagtggta |
146 |
Q |
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| T |
14177191 |
aagagcttgtatggattaaaacaagcaccaagacaatggta |
14177231 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 4 - 57
Target Start/End: Original strand, 20706182 - 20706234
Alignment:
| Q |
4 |
aaaactgcatttcttcatggagatttggaagaggagatttatatggagcaacca |
57 |
Q |
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| T |
20706182 |
aaaaatgcatttctacatggagatttagaaaaggaga-ttatatggagcaacca |
20706234 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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