View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17402_high_28 (Length: 349)

Name: NF17402_high_28
Description: NF17402
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17402_high_28
NF17402_high_28
[»] chr5 (8 HSPs)
chr5 (24-160)||(28474144-28474280)
chr5 (28-183)||(32762254-32762416)
chr5 (84-188)||(32656813-32656917)
chr5 (62-173)||(32857519-32857628)
chr5 (83-177)||(32739357-32739449)
chr5 (31-165)||(32558548-32558688)
chr5 (142-185)||(32660926-32660969)
chr5 (24-73)||(32652486-32652535)
[»] chr1 (4 HSPs)
chr1 (24-189)||(17582757-17582923)
chr1 (62-188)||(17590655-17590782)
chr1 (248-306)||(34344780-34344837)
chr1 (24-70)||(17590784-17590830)
[»] chr7 (3 HSPs)
chr7 (62-161)||(37576392-37576492)
chr7 (26-173)||(7970569-7970720)
chr7 (304-339)||(7971005-7971040)
[»] chr2 (2 HSPs)
chr2 (243-297)||(43224723-43224777)
chr2 (243-295)||(16405485-16405538)
[»] chr8 (1 HSPs)
chr8 (240-306)||(31608334-31608400)


Alignment Details
Target: chr5 (Bit Score: 133; Significance: 4e-69; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 133; E-Value: 4e-69
Query Start/End: Original strand, 24 - 160
Target Start/End: Complemental strand, 28474280 - 28474144
Alignment:
Q  24 aagaaaatcatcaatttatactttgaaccatttgttagaataaaataagagattcattgtaaggcttgttagcaagttttgtaatcaaaagtataaccaa 123  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28474280 aagaaaatcatcaaattatactttgaaccatttgttagaataaaataagagattcattgtaaggcttgttagcaagttttgtaatcaaaagtataaccaa 28474181  T
Q  124 cataaaggtaatcattctcaatatattcttctcaaaa 160  Q
    |||||||||||||||||||||||||||||||||||||    
T  28474180 cataaaggtaatcattctcaatatattcttctcaaaa 28474144  T

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Target: chr5; HSP #2
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 28 - 183
Target Start/End: Complemental strand, 32762416 - 32762254
Alignment:
Q  28 aaatcatcaatttatactttgaaccatttgttagaataaaataa-----gagat-tcattgtaaggcttgttagcaagttt-tgtaatcaaaagtataac 120  Q
    |||||||||| ||| | |||||||||||||||||||||||||||     ||||| || |||||||| |||  ||||||||| || |||||||||||||||    
T  32762416 aaatcatcaaattagagtttgaaccatttgttagaataaaataaaataagagatgtctttgtaaggattgaaagcaagtttatgaaatcaaaagtataac 32762317  T
Q  121 caacataaaggtaatcattctcaatatattcttctcaaaatctatgtactcaatgacagattg 183  Q
     | ||||||| |||||||| |||||||||| |||||||||| ||||||||||||||| |||||    
T  32762316 aaccataaagctaatcattttcaatatattattctcaaaatttatgtactcaatgacggattg 32762254  T

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Target: chr5; HSP #3
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 84 - 188
Target Start/End: Original strand, 32656813 - 32656917
Alignment:
Q  84 aaggcttgttagcaagttttgtaatcaaaagtataaccaacataaaggtaatcattctcaatatattcttctcaaaatctatgtactcaatgacagattg 183  Q
    ||||||||||||||||   || ||| |||||||||||||||||| || |||||||||||||| |||||||||||||||| ||| ||||||||||||| ||    
T  32656813 aaggcttgttagcaagccatgcaattaaaagtataaccaacatatagttaatcattctcaatttattcttctcaaaatcaatgaactcaatgacagactg 32656912  T
Q  184 tggct 188  Q
    |||||    
T  32656913 tggct 32656917  T

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Target: chr5; HSP #4
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 62 - 173
Target Start/End: Complemental strand, 32857628 - 32857519
Alignment:
Q  62 aataaaataagagattcattg-taaggcttgttagcaagttttgtaatcaaaagtataaccaacataaaggtaatcattctcaatatattcttctcaaaa 160  Q
    ||||||||||||||||  ||| |||||||| |||   |||| || || |||||||||||||||||||||| |||| ||||||||| ||||||||||||||    
T  32857628 aataaaataagagatttcttggtaaggcttctta---agttatgcaagcaaaagtataaccaacataaagctaattattctcaatttattcttctcaaaa 32857532  T
Q  161 tctatgtactcaa 173  Q
    |||||||||||||    
T  32857531 tctatgtactcaa 32857519  T

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Target: chr5; HSP #5
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 83 - 177
Target Start/End: Complemental strand, 32739449 - 32739357
Alignment:
Q  83 taaggcttgttagcaagttttgtaatcaaaagtataaccaacataaaggtaatcattctcaatatattcttctcaaaatctatgtactcaatgac 177  Q
    ||||||||||||||||||| |   |||||||||||||||||||  ||| ||||||| || | | ||||||||| |||||||||||||||||||||    
T  32739449 taaggcttgttagcaagttatacgatcaaaagtataaccaaca--aagctaatcatactaagtttattcttcttaaaatctatgtactcaatgac 32739357  T

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Target: chr5; HSP #6
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 31 - 165
Target Start/End: Original strand, 32558548 - 32558688
Alignment:
Q  31 tcatcaatttatactttgaaccatttgttagaataaaataa-----gagatt-cattgtaaggcttgttagcaagttttgtaatcaaaagtataaccaac 124  Q
    ||||||| ||| ||||||||||||| | |||||||||||||     |||||| | ||| |||||||||||||| ||  || |||||||||||||||||||    
T  32558548 tcatcaaattagactttgaaccattaggtagaataaaataaagtaagagatttctttgcaaggcttgttagcatgtcgtgcaatcaaaagtataaccaac 32558647  T
Q  125 ataaaggtaatcattctcaatatattcttctcaaaatctat 165  Q
    | |||  |||||||||||||  | ||||||| ||| |||||    
T  32558648 acaaaactaatcattctcaaatttttcttcttaaagtctat 32558688  T

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Target: chr5; HSP #7
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 142 - 185
Target Start/End: Original strand, 32660926 - 32660969
Alignment:
Q  142 caatatattcttctcaaaatctatgtactcaatgacagattgtg 185  Q
    |||| |||||||||||||||||||||||||||||||||||||||    
T  32660926 caatttattcttctcaaaatctatgtactcaatgacagattgtg 32660969  T

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Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 24 - 73
Target Start/End: Original strand, 32652486 - 32652535
Alignment:
Q  24 aagaaaatcatcaatttatactttgaaccatttgttagaataaaataaga 73  Q
    |||||||||||||| ||| ||||||||||||||  || ||||||||||||    
T  32652486 aagaaaatcatcaagttagactttgaaccatttactaaaataaaataaga 32652535  T

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Target: chr1 (Bit Score: 107; Significance: 1e-53; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 24 - 189
Target Start/End: Complemental strand, 17582923 - 17582757
Alignment:
Q  24 aagaaaatcatcaatttatactttgaaccatttgttagaataaaataagagattcatt-gtaaggcttgttagcaagttttgtaatcaaaagtataacca 122  Q
    |||||||||||||| ||| ||||||||||||||||||||||||||||| ||||| ||| ||||||||||||||||| || || |||||||||||||||||    
T  17582923 aagaaaatcatcaaattagactttgaaccatttgttagaataaaataaaagatttatttgtaaggcttgttagcaaattatgcaatcaaaagtataacca 17582824  T
Q  123 acataaaggtaatcattctcaatatattcttctcaaaatctatgtactcaatgacagattgtggcta 189  Q
    |||||||| |||||||||||||| |||||||| ||||| |||||||||||||||| ||||| |||||    
T  17582823 acataaagctaatcattctcaatttattcttcacaaaagctatgtactcaatgacggattgcggcta 17582757  T

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Target: chr1; HSP #2
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 62 - 188
Target Start/End: Complemental strand, 17590782 - 17590655
Alignment:
Q  62 aataaaataagagatt-cattgtaaggcttgttagcaagttttgtaatcaaaagtataaccaacataaaggtaatcattctcaatatattcttctcaaaa 160  Q
    |||||||||||||||| | |||| ||||||||||||||||| || || ||||||||||| ||||||| || |||||||||||||| |||||||| |||||    
T  17590782 aataaaataagagatttctttgtgaggcttgttagcaagttatgcaaccaaaagtataatcaacatacagctaatcattctcaatttattcttcacaaaa 17590683  T
Q  161 tctatgtactcaatgacagattgtggct 188  Q
    |||||||||||||| || ||||| ||||    
T  17590682 tctatgtactcaattacggattgcggct 17590655  T

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Target: chr1; HSP #3
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 248 - 306
Target Start/End: Original strand, 34344780 - 34344837
Alignment:
Q  248 ttatagcgacaatctttttcacgaaggatcacgaacagttatttttgtaaacataacac 306  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  34344780 ttatagcgacaatctttttcacgaaggatcacgaacagttatttttgt-aacataacac 34344837  T

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Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 24 - 70
Target Start/End: Complemental strand, 17590830 - 17590784
Alignment:
Q  24 aagaaaatcatcaatttatactttgaaccatttgttagaataaaata 70  Q
    |||||||||||||| ||| ||||||| | ||||||||||||||||||    
T  17590830 aagaaaatcatcaaattagactttgatcgatttgttagaataaaata 17590784  T

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Target: chr7 (Bit Score: 61; Significance: 4e-26; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 62 - 161
Target Start/End: Complemental strand, 37576492 - 37576392
Alignment:
Q  62 aataaaataagaga-ttcattgtaaggcttgttagcaagttttgtaatcaaaagtataaccaacataaaggtaatcattctcaatatattcttctcaaaa 160  Q
    |||||||||||||| ||| |||||||||||||||||||||| || ||||||||||||||||||||||||  |||||||||| | | ||||||||||||||    
T  37576492 aataaaataagagaattctttgtaaggcttgttagcaagttatgcaatcaaaagtataaccaacataaatctaatcattcttagtttattcttctcaaaa 37576393  T
Q  161 t 161  Q
    |    
T  37576392 t 37576392  T

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Target: chr7; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 26 - 173
Target Start/End: Original strand, 7970569 - 7970720
Alignment:
Q  26 gaaaatcatcaatttatactttgaaccatttgttagaataaaataa-----gagattcattgtaaggcttgttagcaagttttgtaatcaaaagtataac 120  Q
    |||||||||||| ||| ||||||||||||||  || ||||||||||     ||||||   |||||||||||||||||     || |||||||||||||||    
T  7970569 gaaaatcatcaaattagactttgaaccattttctataataaaataaagtaagagattttatgtaaggcttgttagcagaccatgcaatcaaaagtataac 7970668  T
Q  121 caacataaaggtaatcattctcaatatattcttctcaaaatctatgtactcaa 173  Q
    |||||| ||| | |||||||| ||| ||||||||| |||||| ||||||||||    
T  7970669 caacat-aagctgatcattcttaatttattcttcttaaaatcaatgtactcaa 7970720  T

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Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 304 - 339
Target Start/End: Original strand, 7971005 - 7971040
Alignment:
Q  304 cactactagacctcatttgttatgcatttatctctg 339  Q
    ||||||||||||||||||||||||||| ||||||||    
T  7971005 cactactagacctcatttgttatgcatctatctctg 7971040  T

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Target: chr2 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 243 - 297
Target Start/End: Original strand, 43224723 - 43224777
Alignment:
Q  243 gctagttatagcgacaatctttttcacgaaggatcacgaacagttatttttgtaa 297  Q
    |||||||||||||| ||||||||||| ||||||||||||||| || |||||||||    
T  43224723 gctagttatagcgaaaatctttttcaagaaggatcacgaacaattgtttttgtaa 43224777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 243 - 295
Target Start/End: Complemental strand, 16405538 - 16405485
Alignment:
Q  243 gctagttatagcgacaatctttttcacgaaggatcacgaac-agttatttttgt 295  Q
    |||||||||||||| || ||||||||| ||| ||||||||| ||||||||||||    
T  16405538 gctagttatagcgaaaaactttttcacaaagcatcacgaacaagttatttttgt 16405485  T

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Target: chr8 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 240 - 306
Target Start/End: Original strand, 31608334 - 31608400
Alignment:
Q  240 aacgctagttatagcgacaatctttttcacgaaggatcacgaacagttatttttgtaaacataacac 306  Q
    ||||||| ||||||||||||| ||||| ||||| |||||| |||||||||||||   ||||||||||    
T  31608334 aacgctacttatagcgacaatttttttaacgaatgatcacaaacagttattttttgtaacataacac 31608400  T

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