View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17402_high_3 (Length: 473)
Name: NF17402_high_3
Description: NF17402
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17402_high_3 |
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Alignment Details
Target: chr7 (Bit Score: 356; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 356; E-Value: 0
Query Start/End: Original strand, 30 - 459
Target Start/End: Original strand, 10194107 - 10194538
Alignment:
| Q |
30 |
atgtgttctataaccttataccagtagtacataatctggtattgcaatttgtcataaactgcatcgcatcaattgcattcactgcaacatggaacttatc |
129 |
Q |
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| T |
10194107 |
atgtgttctataaccttataccagtagtacataatctggtattgcaatttgtcataaact-----gaatcaattgcattcactgcaacatggaacttatc |
10194201 |
T |
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| Q |
130 |
aaaattttctgtccctaacaccattccaggcatcctgatatcaggatcaaggaattcgaactcatctgttactgaacatgccgcctaacagtgtttgatc |
229 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
10194202 |
aaaattttctgtccctaacaccattccaggcatcctgatatcaggatcaaggaattcgaactcatctgttactgaacatgcagcctaacagtgtttgatc |
10194301 |
T |
|
| Q |
230 |
ataaatcgcaaattataattgaca---------agaaaaccctaaaccgtataagtagtgatcggatcttttgcacttcgcttgtctttcatcatattta |
320 |
Q |
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| T |
10194302 |
ataaatcgcaaattataattgacaagaaaaaccagaaaaccctaaaccgtataagtagtgatcggatcttttgcacttcgcttgtctttcatcatattta |
10194401 |
T |
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| Q |
321 |
tctttaaatgcgttacttattcaaaatcgaatgctttgtttccaaaactcaagccagcacagttcatctcactcgacaatagcttttgattaaaacaccg |
420 |
Q |
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| T |
10194402 |
tctttaaatgcgttacttattcaaaatagaatgctttgtttccaaaactcaagccagcacagctcatctcaat--acaatagcttttgattaaaacaccg |
10194499 |
T |
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| Q |
421 |
tttaaatccactaaagctaatcagcaaaatcacaggttc |
459 |
Q |
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| T |
10194500 |
tttaaatccactaaagctaatcagcaaaatcacaggttc |
10194538 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 87; Significance: 2e-41; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 322 - 459
Target Start/End: Complemental strand, 19459304 - 19459169
Alignment:
| Q |
322 |
ctttaaatgcgttacttattcaaaatcgaatgctttgtttccaaaactcaagccagcacagttcatctcactcgacaatagcttttgattaaaacaccgt |
421 |
Q |
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|||| |||||||||||| ||||||||| || ||||||||||||||||||||||||||||| |||||||| | |||||||||||||||||||| || || |
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| T |
19459304 |
ctttgaatgcgttacttgttcaaaatcaaactctttgtttccaaaactcaagccagcacagctcatctcaat--acaatagcttttgattaaaatacggt |
19459207 |
T |
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| Q |
422 |
ttaaatccactaaagctaatcagcaaaatcacaggttc |
459 |
Q |
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| T |
19459206 |
ttaaatccactgaagctaatcagcaaaatcacaggttc |
19459169 |
T |
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