View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17402_high_34 (Length: 324)
Name: NF17402_high_34
Description: NF17402
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17402_high_34 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 259; Significance: 1e-144; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 14 - 324
Target Start/End: Original strand, 34166833 - 34167143
Alignment:
| Q |
14 |
gagatgaacagagaatgcaagagtctggaacttttagctctacactgggagagtatgtccaacttatgaatttttagctaattaaactttccaatgacgt |
113 |
Q |
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| T |
34166833 |
gagaagaacagagaatgcaagagtctggaacttttagctctacactgggagagtatgtccaacttatgaatttttagctaattaaactttccaatgacgt |
34166932 |
T |
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| Q |
114 |
aatttatttcttgagtgaaattagaaggttgtcgtgatcctactagagaaatggactnnnnnnnngcttataaagggtagacaatcctcagcatttaagc |
213 |
Q |
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| T |
34166933 |
aatttatttcttgagtgaaattagaaggttgtcgtgatcctactagagaaatggactaaaaaaaagcttataaagggtagacaatcctcagcatttaagc |
34167032 |
T |
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| Q |
214 |
cagtttgtcggggacgacttagactcaaacctaggatgatattataacctgataaatgtgnnnnnnnnacccatcagtaaaggtacaaactaaaatgttg |
313 |
Q |
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| T |
34167033 |
cagtttgtcggggacgacttagactcaaacctaggatgatattataacctgataaatgtgttttttttacccatcagtaaaggtacaaactaaaatgttg |
34167132 |
T |
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| Q |
314 |
cgtcctaggca |
324 |
Q |
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| T |
34167133 |
cgtcctaggca |
34167143 |
T |
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