View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17402_high_42 (Length: 309)

Name: NF17402_high_42
Description: NF17402
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17402_high_42
NF17402_high_42
[»] chr6 (1 HSPs)
chr6 (10-309)||(8073259-8073551)


Alignment Details
Target: chr6 (Bit Score: 242; Significance: 1e-134; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 10 - 309
Target Start/End: Original strand, 8073259 - 8073551
Alignment:
Q  10 attattctaatatcgcagtttttaatcattgtaggtgtactagctaatatatattactactgactaaataatcaaactcagttaatgagtcttagctaat 109  Q
    ||||||||||||| |||||||||||||       |||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||    
T  8073259 attattctaatattgcagtttttaatc-------gtgtactagctaatatatattactactgactaaataatcaaacttagttaatgagttttagctaat 8073351  T
Q  110 gacaaatcctttgagagatttggattcaaagttttgctagaattatttttagtcaaattttacttatcttgcggtcgaggtctaaattaccacgacacgt 209  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||| |    
T  8073352 gacaaatcctttgagagatttggattcaaaattttgctagaattatttttagtcaaattttacttatcttacggtcgaggtctaaattaccatgacactt 8073451  T
Q  210 ttgaatgtctcattcacctacttgcctactccataggagttcatatctcctcttttcttgcacttccatcttccctttataccatcttaatggaatatct 309  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8073452 ttgaatgtctcattcacctacttgcccactccataggagttcatatctcctcttttcttgcacttccatcttccctttataccatcttaatggaatatct 8073551  T

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