View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17402_high_5 (Length: 412)
Name: NF17402_high_5
Description: NF17402
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17402_high_5 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 248; Significance: 1e-137; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 248; E-Value: 1e-137
Query Start/End: Original strand, 78 - 360
Target Start/End: Original strand, 1820775 - 1821058
Alignment:
| Q |
78 |
cggagaaccatcaccggcatgacaacaacatttttgtcttgtttctcgagttcttcaacacgttctttaagttgtttcacataatcaattgcttctcgaa |
177 |
Q |
| |
|
|||||||||||||||||| ||||| ||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
1820775 |
cggagaaccatcaccggcgtgacaccaacatttttgtcttgtttctcgagctcttcaacatgttctttaagttgtttcacataatcaatcgcttctcgaa |
1820874 |
T |
|
| Q |
178 |
gtattgaagccttgtccatctataaagaaggaatcgtaaaattttaatattataata-ttcttaaataagtaaatgattgaacttaatggttaataaact |
276 |
Q |
| |
|
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1820875 |
gtaatgaagccttgtccatctataaagaaggaatcgtaaaattttaatattataatatttcttaaataagtaaatgattgaacttaatggttaataaact |
1820974 |
T |
|
| Q |
277 |
ctactaaagtatgacttatttgaaaggatttaggtttgatttatgagctgaacaccaaaatttcttcgccttccttctaatata |
360 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1820975 |
ctactaaagtatgacttgtttgaaaggatttaggtttgatttatgagctgaacaccaaaatttcttcgccttccttctaatata |
1821058 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 108; E-Value: 4e-54
Query Start/End: Original strand, 25 - 223
Target Start/End: Original strand, 1840971 - 1841184
Alignment:
| Q |
25 |
catcacaacttgtttcaccagaatttgtgtcttcattgtaattattgattccac---------------ggagaaccatcaccggcatgacaacaacatt |
109 |
Q |
| |
|
|||||||||||||||||| ||||| ||||||||||||||||||||| |||||| ||||||||||||||||| ||||| ||||||| |
|
|
| T |
1840971 |
catcacaacttgtttcactcgaattcgtgtcttcattgtaattattgtttccacatgaataaggtttccggagaaccatcaccggcgtgacaccaacatt |
1841070 |
T |
|
| Q |
110 |
tttgtcttgtttctcgagttcttcaacacgttctttaagttgtttcacataatcaattgcttctcgaagtattgaagccttgtccatctataaagaagga |
209 |
Q |
| |
|
|||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| | ||| |
|
|
| T |
1841071 |
tttgtcttgtttctcgagctcatcaacacgttctttaagttgtttcacataatcaattgcttctcgaagtattgaagccttgtctgtctataaaaatgga |
1841170 |
T |
|
| Q |
210 |
atcgtaaaatttta |
223 |
Q |
| |
|
|| |||||||||| |
|
|
| T |
1841171 |
atattaaaatttta |
1841184 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 22 - 62
Target Start/End: Original strand, 1820713 - 1820753
Alignment:
| Q |
22 |
catcatcacaacttgtttcaccagaatttgtgtcttcattg |
62 |
Q |
| |
|
||||| ||||||||||||||||||||||||||| ||||||| |
|
|
| T |
1820713 |
catcaccacaacttgtttcaccagaatttgtgtattcattg |
1820753 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University