View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17402_high_6 (Length: 404)

Name: NF17402_high_6
Description: NF17402
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17402_high_6
NF17402_high_6
[»] chr2 (5 HSPs)
chr2 (24-383)||(21807540-21807899)
chr2 (38-335)||(20971202-20971497)
chr2 (188-278)||(23682248-23682338)
chr2 (206-287)||(4939268-4939349)
chr2 (206-287)||(5024358-5024439)
[»] chr4 (2 HSPs)
chr4 (24-383)||(16988055-16988414)
chr4 (187-282)||(35088802-35088897)
[»] chr5 (3 HSPs)
chr5 (40-344)||(26465283-26465587)
chr5 (177-276)||(23884074-23884173)
chr5 (193-331)||(23958779-23958917)
[»] chr6 (5 HSPs)
chr6 (164-375)||(34068387-34068598)
chr6 (172-299)||(20850025-20850152)
chr6 (170-299)||(14617738-14617867)
chr6 (164-285)||(31961838-31961959)
chr6 (164-248)||(28561533-28561617)
[»] chr7 (5 HSPs)
chr7 (178-278)||(3004921-3005021)
chr7 (160-269)||(8853841-8853950)
chr7 (178-272)||(19813298-19813392)
chr7 (187-236)||(18477565-18477614)
chr7 (170-234)||(19666209-19666273)
[»] chr1 (2 HSPs)
chr1 (178-278)||(37737401-37737501)
chr1 (181-240)||(13427935-13427994)
[»] scaffold0257 (1 HSPs)
scaffold0257 (170-344)||(8273-8447)
[»] chr3 (4 HSPs)
chr3 (109-326)||(18963223-18963440)
chr3 (130-236)||(44667108-44667214)
chr3 (214-275)||(4644638-4644699)
chr3 (343-383)||(4643364-4643404)
[»] chr8 (2 HSPs)
chr8 (80-272)||(18551164-18551356)
chr8 (223-281)||(2998101-2998159)


Alignment Details
Target: chr2 (Bit Score: 340; Significance: 0; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 340; E-Value: 0
Query Start/End: Original strand, 24 - 383
Target Start/End: Complemental strand, 21807899 - 21807540
Alignment:
Q  24 acatcatcattatgttcaatctgcttctgatcactctctcttcatcaagaagactgcttcttcattcacaattttacttgtgtacgttgatgatgtgatc 123  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  21807899 acatcatcattatgttcaatctgcttctgatcactctctcttcatcaagaagactgcttcttcattcacaattttacttgtgtatgttgatgatgtgatc 21807800  T
Q  124 ctagctggaaattctatctctgaattccaagatattaaagccattctgcattcttcttttaagatcaaggatcttggccagttaaaatactttcttggtt 223  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21807799 ctagctggaaattctatctctgaattccaagatattaaagccattctgcattcttcttttaagatcaaggatcttggccagttaaaatactttcttggtt 21807700  T
Q  224 tagaggttgctcattcttcacaaggaatctctctttgtcaaagaaagtattgtcttgatcttttaactgatacaggatttttagcttccaaacctgtttc 323  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||| ||||    
T  21807699 tagaggttgctcattcttcacaaggaatctctctttgtcaaagaaagtattgtcttgatcttttaactaatacatgatttttagcttccaaacctatttc 21807600  T
Q  324 tacgccatctgacccttcttgcaaattacacactgattctagttctccttatgatgatgt 383  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  21807599 tacgccatctgacccttcctgcaaattacacactgattctagttctccttatgatgatgt 21807540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 38 - 335
Target Start/End: Complemental strand, 20971497 - 20971202
Alignment:
Q  38 ttcaatctgcttctgatcactctctcttcatcaagaagactgcttcttcattcacaattttacttgtgtacgttgatgatgtgatcctagctggaaattc 137  Q
    |||||||||| |||||||||||||||||||| |||||||| | | |||||||||||   || ||||| || ||||||||||||||  | | ||| | |||    
T  20971497 ttcaatctgcatctgatcactctctcttcattaagaagacagatacttcattcacagccttgcttgtttatgttgatgatgtgattattgttggtacttc 20971398  T
Q  138 tatctctgaattccaagatattaaagccattctgcattcttcttttaagatcaaggatcttggccagttaaaatactttcttggtttagaggttgctcat 237  Q
      | ||||| || || || || |||  || |||||||||||| || ||||| |||| |||||| || || ||||| ||||||||| ||||||||||| ||    
T  20971397 actttctgagtttcaggacatcaaaatcaatctgcattcttccttcaagattaaggctcttggtcaattgaaatattttcttggtctagaggttgcttat 20971298  T
Q  238 tcttcacaaggaatctctctttgtcaaagaaagtattgtcttgatcttttaactgatacaggatttttagcttccaaacctgtttctacgccatctga 335  Q
    || |||||  | ||||||||||| |||||||| || |||||||| |  |  ||||||||| | ||| | ||||| ||||||| |||||| ||||||||    
T  20971297 tcatcacagtgcatctctctttgccaaagaaaataatgtcttgacc--tagactgatacatgttttcttgcttcaaaacctgattctacaccatctga 20971202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 188 - 278
Target Start/End: Original strand, 23682248 - 23682338
Alignment:
Q  188 tcaaggatcttggccagttaaaatactttcttggtttagaggttgctcattcttcacaaggaatctctctttgtcaaagaaagtattgtct 278  Q
    |||| ||||||||||| |||||||| || ||||||||||||||||||||||||  |||||| || ||  | ||||||||||||||||||||    
T  23682248 tcaaagatcttggccaattaaaatatttccttggtttagaggttgctcattctaaacaaggtatttcattgtgtcaaagaaagtattgtct 23682338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 206 - 287
Target Start/End: Complemental strand, 4939349 - 4939268
Alignment:
Q  206 taaaatactttcttggtttagaggttgctcattcttcacaaggaatctctctttgtcaaagaaagtattgtcttgatctttt 287  Q
    ||||||| | ||||||||||||||| |||||||||  ||| || ||||||| ||| || ||||| |||||| | ||||||||    
T  4939349 taaaatattatcttggtttagaggtggctcattctcaacagggtatctctcattgccagagaaaatattgtttggatctttt 4939268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 206 - 287
Target Start/End: Complemental strand, 5024439 - 5024358
Alignment:
Q  206 taaaatactttcttggtttagaggttgctcattcttcacaaggaatctctctttgtcaaagaaagtattgtcttgatctttt 287  Q
    ||||||| | ||||||||||||||| |||||||||  ||| || ||||||| ||| || ||||| |||||| | ||||||||    
T  5024439 taaaatattatcttggtttagaggtggctcattctcaacagggtatctctcattgccagagaaaatattgtttggatctttt 5024358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 332; Significance: 0; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 332; E-Value: 0
Query Start/End: Original strand, 24 - 383
Target Start/End: Original strand, 16988055 - 16988414
Alignment:
Q  24 acatcatcattatgttcaatctgcttctgatcactctctcttcatcaagaagactgcttcttcattcacaattttacttgtgtacgttgatgatgtgatc 123  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||    
T  16988055 acatcatcattatgttcaatctgcttctgatcactctctcttcatcaagaagactgcttcttcattcacagttttacttgtgtatgttgatgatgtgatc 16988154  T
Q  124 ctagctggaaattctatctctgaattccaagatattaaagccattctgcattcttcttttaagatcaaggatcttggccagttaaaatactttcttggtt 223  Q
    |||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16988155 ctagctggaaattctatctctgaatttcaagatattaaagccattatgcattcttcttttaagatcaaggatcttggccagttaaaatactttcttggtt 16988254  T
Q  224 tagaggttgctcattcttcacaaggaatctctctttgtcaaagaaagtattgtcttgatcttttaactgatacaggatttttagcttccaaacctgtttc 323  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16988255 tagaggttgctcattcctcacaaggaatctctctttgtcaaagaaagtattgtcttgatcttttaactgatacaggatttttagcttccaaacctgtttc 16988354  T
Q  324 tacgccatctgacccttcttgcaaattacacactgattctagttctccttatgatgatgt 383  Q
    ||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  16988355 tacaccatctgacccttcatgcaaattacacactgattctagttctccttatgatgatgt 16988414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 187 - 282
Target Start/End: Original strand, 35088802 - 35088897
Alignment:
Q  187 atcaaggatcttggccagttaaaatactttcttggtttagaggttgctcattcttcacaaggaatctctctttgtcaaagaaagtattgtcttgat 282  Q
    |||||||||||||| ||  | |||||||| |||||| | ||||||||||||||   |  ||| || ||||| ||||||||||||||||| ||||||    
T  35088802 atcaaggatcttggtcaactcaaatacttccttggtattgaggttgctcattccaaagcaggcatttctctctgtcaaagaaagtattgccttgat 35088897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 121; Significance: 7e-62; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 121; E-Value: 7e-62
Query Start/End: Original strand, 40 - 344
Target Start/End: Complemental strand, 26465587 - 26465283
Alignment:
Q  40 caatctgcttctgatcactctctcttcatcaagaagactgcttcttcattcacaattttacttgtgtacgttgatgatgtgatcctagctggaaattcta 139  Q
    |||||| | |||||||| ||||| ||||| ||||||||   | |||||||||||  ||| ||||| || ||||||||||||||| |  |||| | |||      
T  26465587 caatctacatctgatcattctcttttcattaagaagacatatacttcattcacagctttgcttgtttatgttgatgatgtgatcatcactggtacttcac 26465488  T
Q  140 tctctgaattccaagatattaaagccattctgcattcttcttttaagatcaaggatcttggccagttaaaatactttcttggtttagaggttgctcattc 239  Q
    |||||||||||||||| || |||||||||||||||||| ||||  | || |||||||||||||| || |||||||||||||||||||| |||||||||||    
T  26465487 tctctgaattccaagacatcaaagccattctgcattctgctttagaaattaaggatcttggccaattgaaatactttcttggtttagaagttgctcattc 26465388  T
Q  240 ttcacaaggaatctctctttgtcaaagaaagtattgtcttgatcttttaactgatacaggatttttagcttccaaacctgtttctacgccatctgaccct 339  Q
     |||||||| ||||||||||| |||||||| ||||||||||||||  ||||||||| ||||||| | ||| | ||||||| |||||| |||||||| ||     
T  26465387 ctcacaaggcatctctctttgccaaagaaaatattgtcttgatctcctaactgatataggatttcttgctgcaaaacctgcttctacaccatctgatcca 26465288  T
Q  340 tcttg 344  Q
    |||||    
T  26465287 tcttg 26465283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 177 - 276
Target Start/End: Complemental strand, 23884173 - 23884074
Alignment:
Q  177 ttcttttaagatcaaggatcttggccagttaaaatactttcttggtttagaggttgctcattcttcacaaggaatctctctttgtcaaagaaagtattgt 276  Q
    |||||| || ||||| ||||||||||| |||||||| || |||||||||||||| |||||||||  |||||||||||| || || |||||||||||||||    
T  23884173 ttctttcaaaatcaaagatcttggccaattaaaatatttccttggtttagaggtagctcattctaaacaaggaatctcactatgccaaagaaagtattgt 23884074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 193 - 331
Target Start/End: Original strand, 23958779 - 23958917
Alignment:
Q  193 gatcttggccagttaaaatactttcttggtttagaggttgctcattcttcacaaggaatctctctt-tgtcaaagaaagtattgtcttgatcttttaact 291  Q
    ||||||||||| || |||||||| |||||||||||||||||||| ||||||||||| || | |||| ||||||||||| ||||| ||||||||| | |||    
T  23958779 gatcttggccaattgaaatacttccttggtttagaggttgctcactcttcacaagggat-tttcttatgtcaaagaaaatattgccttgatcttctgact 23958877  T
Q  292 gatacaggatttttagcttccaaacctgtttctacgccat 331  Q
    || ||| | ||  | || ||||||||| ||||||| ||||    
T  23958878 gacacatgtttccttgcatccaaacctctttctacaccat 23958917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 80; Significance: 2e-37; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 164 - 375
Target Start/End: Original strand, 34068387 - 34068598
Alignment:
Q  164 ccattctgcattcttcttttaagatcaaggatcttggccagttaaaatactttcttggtttagaggttgctcattcttcacaaggaatctctctttgtca 263  Q
    ||||| ||||||| |||||||| |||||||| ||||| || || |||||||| ||||| ||||||||||||||||||||  |||| || ||||| |||||    
T  34068387 ccattttgcattcctcttttaaaatcaaggaccttggtcaattgaaatacttccttggcttagaggttgctcattcttctgaaggcatttctctatgtca 34068486  T
Q  264 aagaaagtattgtcttgatcttttaactgatacaggatttttagcttccaaacctgtttctacgccatctgacccttcttgcaaattacacactgattct 363  Q
     ||||| ||||| |||||| |  |||||||||| ||  || | |||| |||||||||||| || |||||||||||||||||||| ||||| | |||||||    
T  34068487 gagaaaatattgccttgatttgctaactgatactggtcttctggcttgcaaacctgtttccactccatctgacccttcttgcaagttacataatgattct 34068586  T
Q  364 agttctccttat 375  Q
    ||| | ||||||    
T  34068587 agtgccccttat 34068598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 172 - 299
Target Start/End: Complemental strand, 20850152 - 20850025
Alignment:
Q  172 cattcttcttttaagatcaaggatcttggccagttaaaatactttcttggtttagaggttgctcattcttcacaaggaatctctctttgtcaaagaaagt 271  Q
    |||||||| || || || || |||||||| ||||| || ||||||||||||||| || ||||||| |||||||||||||| | | | || || |||||||    
T  20850152 cattcttcattcaaaattaaagatcttggtcagttgaagtactttcttggtttaaagtttgctcactcttcacaaggaatatttttgtgccagagaaagt 20850053  T
Q  272 attgtcttgatcttttaactgatacagg 299  Q
    |||||||||||||| | |||||||||||    
T  20850052 attgtcttgatcttctcactgatacagg 20850025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 170 - 299
Target Start/End: Original strand, 14617738 - 14617867
Alignment:
Q  170 tgcattcttcttttaagatcaaggatcttggccagttaaaatactttcttggtttagaggttgctcattcttcacaaggaatctctctttgtcaaagaaa 269  Q
    ||||||| ||||| ||||| |||||  | ||||| || ||||| || |||||||||||||||||||| ||||| ||||| || || |||| | | |||||    
T  14617738 tgcattcctctttcaagattaaggacttgggccaattgaaataattccttggtttagaggttgctcactcttctcaaggcatttcacttttttagagaaa 14617837  T
Q  270 gtattgtcttgatcttttaactgatacagg 299  Q
    ||||||||| |||||| | |||||| ||||    
T  14617838 gtattgtctggatcttctcactgattcagg 14617867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 164 - 285
Target Start/End: Original strand, 31961838 - 31961959
Alignment:
Q  164 ccattctgcattcttcttttaagatcaaggatcttggccagttaaaatactttcttggtttagaggttgctcattcttcacaaggaatctctctttgtca 263  Q
    |||| |||||||| || || ||||| |||||| | || ||||| ||||| ||| |||||||||| ||||| |||||||| |||||||||||  | ||| |    
T  31961838 ccatactgcattcatccttcaagattaaggatttgggtcagttgaaatattttattggtttagaagttgcacattcttcccaaggaatctcattatgtta 31961937  T
Q  264 aagaaagtattgtcttgatctt 285  Q
     |||||||| ||| ||||||||    
T  31961938 gagaaagtactgtattgatctt 31961959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 164 - 248
Target Start/End: Original strand, 28561533 - 28561617
Alignment:
Q  164 ccattctgcattcttcttttaagatcaaggatcttggccagttaaaatactttcttggtttagaggttgctcattcttcacaagg 248  Q
    |||| ||||||||||| || ||||| || |||||||| ||||| ||||| |||||||| |||||||| || |||||||| |||||    
T  28561533 ccatcctgcattcttccttcaagattaaagatcttggtcagttgaaatattttcttggattagaggtggcacattcttctcaagg 28561617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 57; Significance: 1e-23; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 178 - 278
Target Start/End: Original strand, 3004921 - 3005021
Alignment:
Q  178 tcttttaagatcaaggatcttggccagttaaaatactttcttggtttagaggttgctcattcttcacaaggaatctctctttgtcaaagaaagtattgtc 277  Q
    ||||| || ||||| ||||||||||| |||||||| || ||||||||||||||||||||||||  ||||||||||||  | |||||||||||||||||||    
T  3004921 tctttcaaaatcaaagatcttggccaattaaaatatttccttggtttagaggttgctcattctaaacaaggaatctcattgtgtcaaagaaagtattgtc 3005020  T
Q  278 t 278  Q
    |    
T  3005021 t 3005021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 160 - 269
Target Start/End: Original strand, 8853841 - 8853950
Alignment:
Q  160 aaagccattctgcattcttcttttaagatcaaggatcttggccagttaaaatactttcttggtttagaggttgctcattcttcacaaggaatctctcttt 259  Q
    |||||||||||||| || || ||||| |||||||||||||| || || || || || ||||| |||||| ||||||||||||| |||||||| |||||||    
T  8853841 aaagccattctgcactcctcctttaaaatcaaggatcttggtcaattgaagtatttccttggattagagattgctcattcttctcaaggaatatctcttt 8853940  T
Q  260 gtcaaagaaa 269  Q
    |||| |||||    
T  8853941 gtcagagaaa 8853950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 178 - 272
Target Start/End: Complemental strand, 19813392 - 19813298
Alignment:
Q  178 tcttttaagatcaaggatcttggccagttaaaatactttcttggtttagaggttgctcattcttcacaaggaatctctctttgtcaaagaaagta 272  Q
    ||||| || ||||| |||| | |||| ||||||||||| ||||||||||| ||||||||||||  |||||| || || || || |||||||||||    
T  19813392 tctttcaaaatcaaagatcattgccaattaaaatacttccttggtttagaagttgctcattctgaacaagggatttccctatgccaaagaaagta 19813298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 187 - 236
Target Start/End: Original strand, 18477565 - 18477614
Alignment:
Q  187 atcaaggatcttggccagttaaaatactttcttggtttagaggttgctca 236  Q
    |||||||||||||||||||| ||||  |||||||||||||| ||||||||    
T  18477565 atcaaggatcttggccagttgaaattttttcttggtttagaagttgctca 18477614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 170 - 234
Target Start/End: Original strand, 19666209 - 19666273
Alignment:
Q  170 tgcattcttcttttaagatcaaggatcttggccagttaaaatactttcttggtttagaggttgct 234  Q
    ||||||| ||||| ||||| |||||  | |||||||| ||||| |||||||||||||||||||||    
T  19666209 tgcattcctctttcaagattaaggacttgggccagttgaaatattttcttggtttagaggttgct 19666273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 57; Significance: 1e-23; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 178 - 278
Target Start/End: Complemental strand, 37737501 - 37737401
Alignment:
Q  178 tcttttaagatcaaggatcttggccagttaaaatactttcttggtttagaggttgctcattcttcacaaggaatctctctttgtcaaagaaagtattgtc 277  Q
    ||||| || ||||| ||||||||||| |||||||| || ||||||||||||||||||||||||  ||||||||||||  | |||||||||||||||||||    
T  37737501 tctttcaaaatcaaagatcttggccaattaaaatatttccttggtttagaggttgctcattctaaacaaggaatctcattgtgtcaaagaaagtattgtc 37737402  T
Q  278 t 278  Q
    |    
T  37737401 t 37737401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 181 - 240
Target Start/End: Complemental strand, 13427994 - 13427935
Alignment:
Q  181 tttaagatcaaggatcttggccagttaaaatactttcttggtttagaggttgctcattct 240  Q
    |||||||||||||||||||||||| ||||||| ||||||||  ||||||| ||| |||||    
T  13427994 tttaagatcaaggatcttggccagctaaaatattttcttggcatagaggtggcttattct 13427935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0257 (Bit Score: 51; Significance: 4e-20; HSPs: 1)
Name: scaffold0257
Description:

Target: scaffold0257; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 170 - 344
Target Start/End: Original strand, 8273 - 8447
Alignment:
Q  170 tgcattcttcttttaagatcaaggatcttggccagttaaaatactttcttggtttagaggttgctcattcttcacaaggaatctctctttgtcaaagaaa 269  Q
    ||||||| ||||| ||||| |||||  | ||||| || ||||| ||||||||||||||||||||||| ||||| ||||| || ||| ||||||| | |||    
T  8273 tgcattcctctttcaagattaaggacttgggccaattgaaatattttcttggtttagaggttgctcactcttctcaaggcatatctgtttgtcagaaaaa 8372  T
Q  270 gtattgtcttgatcttttaactgatacaggatttttagcttccaaacctgtttctacgccatctgacccttcttg 344  Q
     |||||||| |||||  | |||||| ||||   ||||||||||||||| ||||| || || ||||| || |||||    
T  8373 atattgtctggatctcctcactgattcaggtcatttagcttccaaaccagtttcaactccttctgagccctcttg 8447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 109 - 326
Target Start/End: Complemental strand, 18963440 - 18963223
Alignment:
Q  109 gttgatgatgtgatcctagctggaaattctatctctgaattccaagatattaaagccattctgcattcttcttttaagatcaaggatcttggccagttaa 208  Q
    ||||||||||||||  | ||||| ||  |||| |||||||| ||| |||| || |  || |||||||| || || || || || |||||||| ||||| |    
T  18963440 gttgatgatgtgataattgctggtaacactatgtctgaatttcaacatatcaatgatatcctgcattcgtcattcaaaattaaagatcttggtcagttga 18963341  T
Q  209 aatactttcttggtttagaggttgctcattcttcacaaggaatctctctttgtcaaagaaagtattgtcttgatcttttaactgatacaggatttttagc 308  Q
    |||| || ||||||||||| ||||| ||||| || |||||||||||| | || ||||| || |||||  |||||||| | | ||||  |||   | ||||    
T  18963340 aatatttccttggtttagaagttgcacattcatctcaaggaatctctttgtgccaaaggaaatattgcattgatcttcttattgatttaggtcatctagc 18963241  T
Q  309 ttccaaacctgtttctac 326  Q
    ||||||||||||||||||    
T  18963240 ttccaaacctgtttctac 18963223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 130 - 236
Target Start/End: Complemental strand, 44667214 - 44667108
Alignment:
Q  130 ggaaattctatctctgaattccaagatattaaagccattctgcattcttcttttaagatcaaggatcttggccagttaaaatactttcttggtttagagg 229  Q
    ||||||||| | ||||| |||||| |||| ||| ||||||||||| |||| || |||||||| ||| | || ||||| || || ||||||||| | ||||    
T  44667214 ggaaattctctttctgagttccaacatatcaaatccattctgcatgcttcattcaagatcaaagatttgggacagttgaactattttcttggtcttgagg 44667115  T
Q  230 ttgctca 236  Q
    |||||||    
T  44667114 ttgctca 44667108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 214 - 275
Target Start/End: Complemental strand, 4644699 - 4644638
Alignment:
Q  214 tttcttggtttagaggttgctcattcttcacaaggaatctctctttgtcaaagaaagtattg 275  Q
    |||||||||||||||||| || ||||||| ||||| || ||||| ||||| ||||| |||||    
T  4644699 tttcttggtttagaggtttctgattcttctcaaggcatatctctatgtcagagaaaatattg 4644638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 343 - 383
Target Start/End: Complemental strand, 4643404 - 4643364
Alignment:
Q  343 tgcaaattacacactgattctagttctccttatgatgatgt 383  Q
    |||||| |||||| |||||||||| ||||||||||||||||    
T  4643404 tgcaaactacacaatgattctagtgctccttatgatgatgt 4643364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 80 - 272
Target Start/End: Complemental strand, 18551356 - 18551164
Alignment:
Q  80 cttcttcattcacaattttacttgtgtacgttgatgatgtgatcctagctggaaattctatctctgaattccaagatattaaagccattctgcattcttc 179  Q
    ||||||||||||| ||  | ||||| || || |||||| | |||||||| ||||||||  | ||||||||  || | || ||| ||||||| |||   ||    
T  18551356 cttcttcattcaccataattcttgtctatgtagatgatatcatcctagcaggaaattcactttctgaatttgaaaacatcaaaaccattcttcataactc 18551257  T
Q  180 ttttaagatcaaggatcttggccagttaaaatactttcttggtttagaggttgctcattcttcacaaggaatctctctttgtcaaagaaagta 272  Q
    ||| || ||||| |||||||||||||| ||||| || ||||||||||| || |||||||||  |||||| || ||| | || |||||||||||    
T  18551256 tttcaaaatcaaagatcttggccagttgaaatatttccttggtttagaagtagctcattctgaacaagggatatctttatgccaaagaaagta 18551164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 223 - 281
Target Start/End: Original strand, 2998101 - 2998159
Alignment:
Q  223 ttagaggttgctcattcttcacaaggaatctctctttgtcaaagaaagtattgtcttga 281  Q
    |||||||||||||||||   | |||| |||||| ||| |||||||||||||||||||||    
T  2998101 ttagaggttgctcattccaaagaagggatctctatttctcaaagaaagtattgtcttga 2998159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University