View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17403_low_2 (Length: 431)
Name: NF17403_low_2
Description: NF17403
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17403_low_2 |
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Alignment Details
Target: chr4 (Bit Score: 298; Significance: 1e-167; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 298; E-Value: 1e-167
Query Start/End: Original strand, 19 - 420
Target Start/End: Original strand, 16158275 - 16158675
Alignment:
| Q |
19 |
gatgcagtatgaaccatgacctaaattttgttattttgctgttttaaatgtgaagggatccaagattcatgccagtgtaaggaagcagttgctatatgtt |
118 |
Q |
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| T |
16158275 |
gatgtagtatcaaccatgacctaa-ttttgttattgtgttgttttaaatgtgaagggatccaagattcataccagtgtaaggaagcagttgctatatgtt |
16158373 |
T |
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| Q |
119 |
ttccaatccaaattaagtgaggggaaggtctacaacctatcatgtttttctgttgctccaagtgctggctcttatcgtactacacaacacccatataaga |
218 |
Q |
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| T |
16158374 |
ttccagtccagattaagtgaggggaaggtctacaacctatcatgtttttctgttgctccaagtgctggctcataccgtaccacacaacacccatataaga |
16158473 |
T |
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| Q |
219 |
ttatcttccagatgataaccaaggttcaggtctccgaaggcttcaccattcctaaatatggtgtttctttgaccaagcttgctgatgtttgtgctcatac |
318 |
Q |
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| T |
16158474 |
ttatcttccagatgacaaccaaggttcaggtctccgaaagcttcaccattcctaaatatggtgtttctttgaccaaacttgttgatgtttgcgctcatac |
16158573 |
T |
|
| Q |
319 |
ctacgattatgactatttagttggtaaataaggatgttatcatattttctctctgaatgttagtgtgtttgggctttgttgaatgaaattaaattgttga |
418 |
Q |
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| T |
16158574 |
ctacgattatgactatttagttggtaaataagcatgtttccatactttctctctgaatgttattgtgtttgtgttttcttgaatgaaattaaattgctga |
16158673 |
T |
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| Q |
419 |
tg |
420 |
Q |
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| T |
16158674 |
tg |
16158675 |
T |
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Target: chr5 (Bit Score: 49; Significance: 7e-19; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 78 - 246
Target Start/End: Original strand, 33436415 - 33436583
Alignment:
| Q |
78 |
ccaagattcatgccagtgtaaggaagcagttgctatatgttttccaatccaaattaagtgaggggaaggtctacaacctatcatgtttttctgttgctcc |
177 |
Q |
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| T |
33436415 |
ccaagatccatgccagtgtgaggaagcaacttttttatgttttccaaagcaagttgagcgagggaaaggtctatgagatgtcctgtttctctgttgctcc |
33436514 |
T |
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| Q |
178 |
aagtgctggctcttatcgtactacacaacacccatataagattatcttccagatgataaccaaggttca |
246 |
Q |
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| T |
33436515 |
aagtgttggttcttatcgcaccaccctacacccatacaagattgttttccagatgacaaccaaggttca |
33436583 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 48; Significance: 3e-18; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 78 - 249
Target Start/End: Complemental strand, 33615281 - 33615110
Alignment:
| Q |
78 |
ccaagattcatgccagtgtaaggaagcagttgctatatgttttccaatccaaattaagtgaggggaaggtctacaacctatcatgtttttctgttgctcc |
177 |
Q |
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||||||| |||||| |||| ||||||||| | || |||||||||||| ||| || || ||||| ||||| || | | |||||||| ||||||||||| |
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| T |
33615281 |
ccaagatccatgccggtgtgaggaagcagcttctttatgttttccaaagcaagttgagcgagggaaaggtttatcagatgtcatgtttctctgttgctcc |
33615182 |
T |
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| Q |
178 |
aagtgctggctcttatcgtactacacaacacccatataagattatcttccagatgataaccaaggttcaggt |
249 |
Q |
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| T |
33615181 |
aagtgttggttcttatcgcaccacctcacacccatacaagattgttttccaaatgacaaccaaggttcaggt |
33615110 |
T |
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