View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17404_high_13 (Length: 203)
Name: NF17404_high_13
Description: NF17404
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17404_high_13 |
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| [»] chr3 (3 HSPs) |
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| [»] chr8 (4 HSPs) |
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| [»] chr4 (4 HSPs) |
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| [»] scaffold0005 (1 HSPs) |
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| [»] chr2 (2 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 154; Significance: 7e-82; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 154; E-Value: 7e-82
Query Start/End: Original strand, 26 - 203
Target Start/End: Complemental strand, 9788003 - 9787826
Alignment:
| Q |
26 |
gataagggctagtactacgaactttaaaaattattcattgaaactaaataggagaatttagatagcctcaattttatttatttttattggttacacagga |
125 |
Q |
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|||||||| ||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
9788003 |
gataagggttagtactacgaactttaaattttattcattgaaaataaataggagaatttagatagcctaaattttatttatttttattggttacacagga |
9787904 |
T |
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| Q |
126 |
gaatgtgaaatatgcgaaatttcgatttcaaggtttggaatttcgtgatgaattggaattcatatttggagagattgt |
203 |
Q |
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||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9787903 |
gaatgtgaaatatgcaaaatttcgatttcaaggtttggaatttcgtgatgaattggaattcatatttggagagattgt |
9787826 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 130; E-Value: 1e-67
Query Start/End: Original strand, 26 - 203
Target Start/End: Original strand, 3589792 - 3589969
Alignment:
| Q |
26 |
gataagggctagtactacgaactttaaaaattattcattgaaactaaataggagaatttagatagcctcaattttatttatttttattggttacacagga |
125 |
Q |
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|||||||| |||||||| ||||||||| ||||||||||||| ||| |||||||||||||||||||| |||||||| || ||||||||||||||||||| |
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| T |
3589792 |
gataagggttagtactatgaactttaatttttattcattgaaagtaagtaggagaatttagatagcctaaattttatctaattttattggttacacagga |
3589891 |
T |
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| Q |
126 |
gaatgtgaaatatgcgaaatttcgatttcaaggtttggaatttcgtgatgaattggaattcatatttggagagattgt |
203 |
Q |
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| T |
3589892 |
gaatgtgaaatatgcgaaatttcgatttcaaggtttgaaatttcgagatgaattggaattcatatttggagagattgt |
3589969 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 40; E-Value: 0.00000000000007
Query Start/End: Original strand, 109 - 188
Target Start/End: Complemental strand, 19607587 - 19607508
Alignment:
| Q |
109 |
ttattggttacacaggagaatgtgaaatatgcgaaatttcgatttcaaggtttggaatttcgtgatgaattggaattcat |
188 |
Q |
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|||||||||| || |||||||| |||||| | |||||||| |||||||| || ||||||||||||||||| |||||||| |
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| T |
19607587 |
ttattggttatgcacgagaatgtaaaatattcaaaatttcgttttcaaggattagaatttcgtgatgaattagaattcat |
19607508 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 138; Significance: 2e-72; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 138; E-Value: 2e-72
Query Start/End: Original strand, 26 - 203
Target Start/End: Original strand, 44506200 - 44506377
Alignment:
| Q |
26 |
gataagggctagtactacgaactttaaaaattattcattgaaactaaataggagaatttagatagcctcaattttatttatttttattggttacacagga |
125 |
Q |
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|||||||| |||||||| ||||||||| ||||||||||||| |||||||||||||||||||||||| |||||||| ||||||||||||||||||| || |
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| T |
44506200 |
gataagggttagtactatgaactttaatttttattcattgaaagtaaataggagaatttagatagcctaaattttatctatttttattggttacacatga |
44506299 |
T |
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| Q |
126 |
gaatgtgaaatatgcgaaatttcgatttcaaggtttggaatttcgtgatgaattggaattcatatttggagagattgt |
203 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
44506300 |
gaatgtgaaatatgcgaaatttcgatttcaaggtttggaattttgtgatgaattggaattcatatttggagagattgt |
44506377 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 99 - 194
Target Start/End: Original strand, 24956356 - 24956451
Alignment:
| Q |
99 |
ttatttatttttattggttacacaggagaatgtgaaatatgcgaaatttcgatttcaaggtttggaatttcgtgatgaattggaattcatatttgg |
194 |
Q |
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|||||| || ||||| |||| |||| |||||| |||||||| |||||||| | ||||||||| ||||||||||||||| |||||||||||||||| |
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| T |
24956356 |
ttatttcttgttattcgttatgcaggggaatgtaaaatatgcaaaatttcgctatcaaggtttagaatttcgtgatgaactggaattcatatttgg |
24956451 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 99 - 197
Target Start/End: Complemental strand, 18176755 - 18176657
Alignment:
| Q |
99 |
ttatttatttttattggttacacaggagaatgtgaaatatgcgaaatttcgatttcaaggtttggaatttcgtgatgaattggaattcatatttggaga |
197 |
Q |
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|||||| || |||||||||| ||||||||||| |||||||| |||||||| | ||||||||| ||||||| ||||||| || || ||||||||||||| |
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| T |
18176755 |
ttatttcttgttattggttatgcaggagaatgtcaaatatgcaaaatttcgctatcaaggtttagaatttcatgatgaactgaaaatcatatttggaga |
18176657 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 121 - 203
Target Start/End: Original strand, 29564316 - 29564398
Alignment:
| Q |
121 |
caggagaatgtgaaatatgcgaaatttcgatttcaaggtttggaatttcgtgatgaattggaattcatatttggagagattgt |
203 |
Q |
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|||||||||||||||||||| ||||||| | |||| | ||| |||||||||| |||||| |||| ||||||||||||||||| |
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| T |
29564316 |
caggagaatgtgaaatatgcaaaatttcaaagtcaaagattgaaatttcgtgaggaattgaaatttatatttggagagattgt |
29564398 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 130; Significance: 1e-67; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 130; E-Value: 1e-67
Query Start/End: Original strand, 26 - 203
Target Start/End: Complemental strand, 10012872 - 10012695
Alignment:
| Q |
26 |
gataagggctagtactacgaactttaaaaattattcattgaaactaaataggagaatttagatagcctcaattttatttatttttattggttacacagga |
125 |
Q |
| |
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|||||||| | |||||| ||||||||| ||||||||||||| |||||||||||||||||||||||| |||||||| |||||||||||||||||||||| |
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| T |
10012872 |
gataagggttggtactatgaactttaatttttattcattgaaagtaaataggagaatttagatagcctaaattttatctatttttattggttacacagga |
10012773 |
T |
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| Q |
126 |
gaatgtgaaatatgcgaaatttcgatttcaaggtttggaatttcgtgatgaattggaattcatatttggagagattgt |
203 |
Q |
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|||||||||||||| |||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||| |
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| T |
10012772 |
gaatgtgaaatatgagaaatttcgatttcaaggtttgaaatttcgtgatgaattgaaattcatatttggagagattgt |
10012695 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 130; E-Value: 1e-67
Query Start/End: Original strand, 26 - 203
Target Start/End: Complemental strand, 10020013 - 10019836
Alignment:
| Q |
26 |
gataagggctagtactacgaactttaaaaattattcattgaaactaaataggagaatttagatagcctcaattttatttatttttattggttacacagga |
125 |
Q |
| |
|
|||||||| | |||||| ||||||||| ||||||||||||| |||||||||||||||||||||||| |||||||| |||||||||||||||||||||| |
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| T |
10020013 |
gataagggttggtactatgaactttaatttttattcattgaaagtaaataggagaatttagatagcctaaattttatctatttttattggttacacagga |
10019914 |
T |
|
| Q |
126 |
gaatgtgaaatatgcgaaatttcgatttcaaggtttggaatttcgtgatgaattggaattcatatttggagagattgt |
203 |
Q |
| |
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|||||||||||||| |||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||| |
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| T |
10019913 |
gaatgtgaaatatgagaaatttcgatttcaaggtttgaaatttcgtgatgaattgaaattcatatttggagagattgt |
10019836 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 121 - 203
Target Start/End: Original strand, 14641023 - 14641105
Alignment:
| Q |
121 |
caggagaatgtgaaatatgcgaaatttcgatttcaaggtttggaatttcgtgatgaattggaattcatatttggagagattgt |
203 |
Q |
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|||||||||||||||||||| ||||||| | |||||| |||||||||||||| |||||| |||| ||||||||||||||||| |
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| T |
14641023 |
caggagaatgtgaaatatgcaaaatttcaaagtcaaggattggaatttcgtgaggaattgaaatttatatttggagagattgt |
14641105 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 121 - 203
Target Start/End: Original strand, 26110467 - 26110549
Alignment:
| Q |
121 |
caggagaatgtgaaatatgcgaaatttcgatttcaaggtttggaatttcgtgatgaattggaattcatatttggagagattgt |
203 |
Q |
| |
|
|||||||||||||||||||| ||||||| | |||||| |||||||||||||| |||||| |||| ||||||||||||||||| |
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| T |
26110467 |
caggagaatgtgaaatatgcaaaatttcaaagtcaaggattggaatttcgtgaggaattgaaatttatatttggagagattgt |
26110549 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0005 (Bit Score: 51; Significance: 2e-20; HSPs: 1)
Name: scaffold0005
Description:
Target: scaffold0005; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 121 - 203
Target Start/End: Complemental strand, 176269 - 176187
Alignment:
| Q |
121 |
caggagaatgtgaaatatgcgaaatttcgatttcaaggtttggaatttcgtgatgaattggaattcatatttggagagattgt |
203 |
Q |
| |
|
|||||||||||||||||||| ||||||| | |||||| |||||||||||||| |||||| |||| ||||||||||||||||| |
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| T |
176269 |
caggagaatgtgaaatatgcaaaatttcaaagtcaaggattggaatttcgtgaggaattgaaatttatatttggagagattgt |
176187 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 47; Significance: 5e-18; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 121 - 203
Target Start/End: Original strand, 7230198 - 7230280
Alignment:
| Q |
121 |
caggagaatgtgaaatatgcgaaatttcgatttcaaggtttggaatttcgtgatgaattggaattcatatttggagagattgt |
203 |
Q |
| |
|
|||||||||||||||||||| ||||||| | |||||| ||| |||||||||| |||||| |||| ||||||||||||||||| |
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|
| T |
7230198 |
caggagaatgtgaaatatgcaaaatttcaaagtcaaggattgaaatttcgtgaggaattgaaatttatatttggagagattgt |
7230280 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 109 - 190
Target Start/End: Complemental strand, 21023309 - 21023228
Alignment:
| Q |
109 |
ttattggttacacaggagaatgtgaaatatgcgaaatttcgatttcaaggtttggaatttcgtgatgaattggaattcatat |
190 |
Q |
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|||||||||| ||||||||||| |||||| |||||||| | |||||||||||| |||| |||||||||||||||||||| |
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|
| T |
21023309 |
ttattggttatgcaggagaatgtaaaatatttaaaatttcgttatcaaggtttggagtttcttgatgaattggaattcatat |
21023228 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 109 - 190
Target Start/End: Original strand, 32604469 - 32604550
Alignment:
| Q |
109 |
ttattggttacacaggagaatgtgaaatatgcgaaatttcgatttcaaggtttggaatttcgtgatgaattggaattcatat |
190 |
Q |
| |
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|||||||||| ||||||||||| |||||| |||||||| | |||||||||||| |||| |||||||||||||||||||| |
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| T |
32604469 |
ttattggttatgcaggagaatgtaaaatatttaaaatttcgttatcaaggtttggagtttcttgatgaattggaattcatat |
32604550 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 122 - 194
Target Start/End: Original strand, 6790379 - 6790451
Alignment:
| Q |
122 |
aggagaatgtgaaatatgcgaaatttcgatttcaaggtttggaatttcgtgatgaattggaattcatatttgg |
194 |
Q |
| |
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||||||||| |||| ||| | |||||||| |||||| || |||||||||||||| |||||| ||||||||| |
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| T |
6790379 |
aggagaatgcaaaatttgcaagatttcgatatcaaggattagaatttcgtgatgagttggaacacatatttgg |
6790451 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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