View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17404_high_3 (Length: 428)
Name: NF17404_high_3
Description: NF17404
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17404_high_3 |
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Alignment Details
Target: chr8 (Bit Score: 344; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 344; E-Value: 0
Query Start/End: Original strand, 1 - 412
Target Start/End: Original strand, 42134551 - 42134959
Alignment:
| Q |
1 |
acactcatcataatctcactcatgggtttgcttcattaattgcagctgaagaagtaataagggctttgagaaataacctcgggaaattgagctgcaactt |
100 |
Q |
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||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42134551 |
acactcatcataatctcactcatcggtttgcttcattaattgcagctgaagaagtaataagggctttgagaaataacctcgggaaattgagctgcaactt |
42134650 |
T |
|
| Q |
101 |
ttgcaacctgtgcttggcacctgcttcacacaaaatgatcctacactcacccaacttgcagctgcaaaaaatggaagaagggcttattagataaaataga |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
42134651 |
ttgcaacctgtgcttggcacctgcttcacacaaaatgatcctacactcacccaacttacagctgcaaaaaatggaagaagggcttattagataaaataga |
42134750 |
T |
|
| Q |
201 |
catgcaactaggatggatctcgtacacttagcagttaaacagtctgttacttgtgtttgagtataaagcaagaaannnnnnnnnnnnnnnggttctccct |
300 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
42134751 |
catgcaactaggatggatctcgtacacttagcagttaaacagtctgttacttgtgtttgagtataaagcaaga---cccccccaccacccggttctccct |
42134847 |
T |
|
| Q |
301 |
tccaggccacttcaacgcagaaacatgtaagaaacaaacataagtcttacccaacttgcaggaggatatcatgtccaggaaacacttcaccattgctgcc |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42134848 |
tccaggccacttcaacgcagaaacatgtaagaaacaaacataagtcttacccaacttgcaggaggatatcatgtccaggaaacacttcaccattgctgcc |
42134947 |
T |
|
| Q |
401 |
acatagacatga |
412 |
Q |
| |
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||| |||||||| |
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| T |
42134948 |
acagagacatga |
42134959 |
T |
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