View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17404_high_5 (Length: 315)

Name: NF17404_high_5
Description: NF17404
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17404_high_5
NF17404_high_5
[»] chr5 (16 HSPs)
chr5 (19-309)||(37412769-37413059)
chr5 (15-251)||(37824248-37824504)
chr5 (15-102)||(37640225-37640312)
chr5 (133-251)||(37400363-37400481)
chr5 (15-102)||(37400532-37400619)
chr5 (15-102)||(37436060-37436147)
chr5 (15-102)||(37533453-37533540)
chr5 (15-102)||(37711977-37712064)
chr5 (133-215)||(37429223-37429305)
chr5 (133-251)||(37697278-37697396)
chr5 (133-232)||(37436198-37436297)
chr5 (15-102)||(37703021-37703108)
chr5 (33-102)||(37594695-37594764)
chr5 (133-232)||(37533591-37533690)
chr5 (133-232)||(37712115-37712214)
chr5 (133-225)||(37640363-37640455)
[»] chr3 (1 HSPs)
chr3 (15-129)||(14553463-14553577)
[»] chr4 (1 HSPs)
chr4 (24-104)||(24217458-24217538)


Alignment Details
Target: chr5 (Bit Score: 267; Significance: 1e-149; HSPs: 16)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 267; E-Value: 1e-149
Query Start/End: Original strand, 19 - 309
Target Start/End: Complemental strand, 37413059 - 37412769
Alignment:
Q  19 tgaggtggttgtcactgaggtacaactctaataaagaaaacaaataataacaccaatgaggatttgttccatctaacatgttattatttaaatccacaat 118  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||    
T  37413059 tgaggtggttgtcactgaggtacaactctaataaagaaaacaaataataacaccaatgaggatttgttccatttaacattttattatttaaatccacaat 37412960  T
Q  119 actcaattttggatattgggccaactaatttattaaatgataaatctaaataagaaagttgagctagatggaacaatgatgagggaatttgacctgtaat 218  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37412959 actcaattttggatattgggccaactaatttattaaatgataaatctaaataagaaagttgagctagatggaacaatgatgagggaatttgacctgtaat 37412860  T
Q  219 gttgttagaggaaatatctaaatattctaatttaataagcttatggaacatattcaagatcaaaccggtaaagctattttcttcgagatcc 309  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||| ||| ||||||    
T  37412859 gttgttagaggaaatatctaaatattctaatttaataagcttatggaacatattcaagatcaaaccggtaaaggcattttgttcaagatcc 37412769  T

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Target: chr5; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 15 - 251
Target Start/End: Original strand, 37824248 - 37824504
Alignment:
Q  15 cctgtgaggtggttgtcactgaggtacaactctaataaagaaaacaaataataacaccaatgaggatttgttccatctaacatgttattatttaaatcca 114  Q
    ||||||||||||||||| ||||||  ||||||||| || |||  |||| ||||||||||||| ||| ||||||||| ||||||||||    |||||||||    
T  37824248 cctgtgaggtggttgtcgctgaggcccaactctaacaacgaaggcaaagaataacaccaatgtggaattgttccatttaacatgttaaagcttaaatcca 37824347  T
Q  115 caatactcaattttg----------gat----------attgggccaactaatttattaaatgataaatctaaataagaaagttgagctagatggaacaa 194  Q
    |||||||||||||||          |||          ||||||||||||| ||| ||| ||||||||| |||||||||||| |||| |||||| || |     
T  37824348 caatactcaattttgaacgttttgtgatttcaattggaattgggccaactagtttgttagatgataaatataaataagaaagatgaggtagatgaaaaag 37824447  T
Q  195 tgatgagggaatttgacctgtaatgttgttagaggaaatatctaaatattctaattt 251  Q
    |||||| |||| ||| ||||| | ||||||||||||||   |||||||||| |||||    
T  37824448 tgatgatggaacttggcctgttaggttgttagaggaaagtgctaaatattccaattt 37824504  T

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Target: chr5; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 15 - 102
Target Start/End: Original strand, 37640225 - 37640312
Alignment:
Q  15 cctgtgaggtggttgtcactgaggtacaactctaataaagaaaacaaataataacaccaatgaggatttgttccatctaacatgttat 102  Q
    |||||||| | |||||||||||||||||||||||| || |||  |||| ||||||||||||| ||| ||||||||| |||||||||||    
T  37640225 cctgtgagattgttgtcactgaggtacaactctaacaacgaaggcaaagaataacaccaatgtggaattgttccatttaacatgttat 37640312  T

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Target: chr5; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 133 - 251
Target Start/End: Complemental strand, 37400481 - 37400363
Alignment:
Q  133 attgggccaactaatttattaaatgataaatctaaataagaaagttgagctagatggaacaatgatgagggaatttgacctgtaatgttgttagaggaaa 232  Q
    ||||||||||||| ||| ||| ||||||||| ||||| |||||| |||| |||||| || | |||||| |||| ||| ||||| | ||||||||||||||    
T  37400481 attgggccaactagtttgttagatgataaatataaatgagaaagatgaggtagatgaaaaagtgatgatggaacttggcctgttaggttgttagaggaaa 37400382  T
Q  233 tatctaaatattctaattt 251  Q
       |||||||||| |||||    
T  37400381 gtgctaaatattccaattt 37400363  T

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Target: chr5; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 15 - 102
Target Start/End: Complemental strand, 37400619 - 37400532
Alignment:
Q  15 cctgtgaggtggttgtcactgaggtacaactctaataaagaaaacaaataataacaccaatgaggatttgttccatctaacatgttat 102  Q
    |||||||| | |||||  ||||||||||||||||| || |||  |||| ||||||||||||| ||| ||||||||| |||||||||||    
T  37400619 cctgtgagattgttgttgctgaggtacaactctaacaacgaaggcaaagaataacaccaatgtggaattgttccatttaacatgttat 37400532  T

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Target: chr5; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 15 - 102
Target Start/End: Original strand, 37436060 - 37436147
Alignment:
Q  15 cctgtgaggtggttgtcactgaggtacaactctaataaagaaaacaaataataacaccaatgaggatttgttccatctaacatgttat 102  Q
    |||||||| ||||||| |  ||||||||||||||| || |||  ||||||||||||||| || ||| ||||||||| |||||||||||    
T  37436060 cctgtgagatggttgtaatggaggtacaactctaacaatgaaggcaaataataacaccactgtggaattgttccatttaacatgttat 37436147  T

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Target: chr5; HSP #7
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 15 - 102
Target Start/End: Original strand, 37533453 - 37533540
Alignment:
Q  15 cctgtgaggtggttgtcactgaggtacaactctaataaagaaaacaaataataacaccaatgaggatttgttccatctaacatgttat 102  Q
    ||||||||||||||||  |||||||  |||||||| || |||  |||| ||||||||||||| ||| ||||||||| |||||||||||    
T  37533453 cctgtgaggtggttgttgctgaggtgtaactctaacaacgaaggcaaagaataacaccaatgtggaattgttccatttaacatgttat 37533540  T

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Target: chr5; HSP #8
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 15 - 102
Target Start/End: Original strand, 37711977 - 37712064
Alignment:
Q  15 cctgtgaggtggttgtcactgaggtacaactctaataaagaaaacaaataataacaccaatgaggatttgttccatctaacatgttat 102  Q
    ||||||||||||||||| ||||||  ||||||||| || |||  |||| |||||||||| || ||| ||||||||| |||||||||||    
T  37711977 cctgtgaggtggttgtcgctgaggcccaactctaacaatgaaggcaaagaataacaccactgtggaattgttccatttaacatgttat 37712064  T

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Target: chr5; HSP #9
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 133 - 215
Target Start/End: Original strand, 37429223 - 37429305
Alignment:
Q  133 attgggccaactaatttattaaatgataaatctaaataagaaagttgagctagatggaacaatgatgagggaatttgacctgt 215  Q
    ||||||||| ||||||||||||| |||||||||||   |||||| |||| |||||| ||||||||||| |||| ||| |||||    
T  37429223 attgggccatctaatttattaaacgataaatctaacatagaaagctgagttagatgaaacaatgatgatggaacttggcctgt 37429305  T

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Target: chr5; HSP #10
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 133 - 251
Target Start/End: Original strand, 37697278 - 37697396
Alignment:
Q  133 attgggccaactaatttattaaatgataaatctaaataagaaagttgagctagatggaacaatgatgagggaatttgacctgtaatgttgttagaggaaa 232  Q
    ||||| ||||||| ||| |||||||||||| |||||| |||||| || | |||||| || | |||||| |||| ||| ||||| | ||||||||||||||    
T  37697278 attggcccaactagtttgttaaatgataaacctaaatgagaaaggtggggtagatgaaaaagtgatgatggaacttggcctgttaggttgttagaggaaa 37697377  T
Q  233 tatctaaatattctaattt 251  Q
       |||||||||| |||||    
T  37697378 gtgctaaatattccaattt 37697396  T

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Target: chr5; HSP #11
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 133 - 232
Target Start/End: Original strand, 37436198 - 37436297
Alignment:
Q  133 attgggccaactaatttattaaatgataaatctaaataagaaagttgagctagatggaacaatgatgagggaatttgacctgtaatgttgttagaggaaa 232  Q
    ||||||||||||| ||| ||||||||||||||||||| |||||| || | |||||| || | |||||| |||| ||| ||||| | | |||| |||||||    
T  37436198 attgggccaactagtttgttaaatgataaatctaaatgagaaaggtggggtagatgaaaaagtgatgatggaacttggcctgttaggctgttggaggaaa 37436297  T

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Target: chr5; HSP #12
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 15 - 102
Target Start/End: Original strand, 37703021 - 37703108
Alignment:
Q  15 cctgtgaggtggttgtcactgaggtacaactctaataaagaaaacaaataataacaccaatgaggatttgttccatctaacatgttat 102  Q
    ||||||||||||||||| | ||||  |||| |||| || |||  |||| ||||||||||||| ||| ||||||||| |||||||||||    
T  37703021 cctgtgaggtggttgtcgccgaggaccaaccctaacaacgaaggcaaagaataacaccaatgtggaattgttccatttaacatgttat 37703108  T

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Target: chr5; HSP #13
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 33 - 102
Target Start/End: Original strand, 37594695 - 37594764
Alignment:
Q  33 ctgaggtacaactctaataaagaaaacaaataataacaccaatgaggatttgttccatctaacatgttat 102  Q
    ||||||||||| ||||| || |||  |||| ||||||||||||| ||| ||||||||| |||||||||||    
T  37594695 ctgaggtacaattctaacaacgaaggcaaagaataacaccaatgtggaattgttccatttaacatgttat 37594764  T

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Target: chr5; HSP #14
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 133 - 232
Target Start/End: Original strand, 37533591 - 37533690
Alignment:
Q  133 attgggccaactaatttattaaatgataaatctaaataagaaagttgagctagatggaacaatgatgagggaatttgacctgtaatgttgttagaggaaa 232  Q
    ||||| ||||||| ||| ||| |||||||| |||||  |||||| |||| |||||| || | |||||| |||| ||| ||||| | ||||||||||||||    
T  37533591 attggcccaactagtttgttatatgataaacctaaaatagaaaggtgaggtagatgaaaaagtgatgatggaacttggcctgttaggttgttagaggaaa 37533690  T

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Target: chr5; HSP #15
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 133 - 232
Target Start/End: Original strand, 37712115 - 37712214
Alignment:
Q  133 attgggccaactaatttattaaatgataaatctaaataagaaagttgagctagatggaacaatgatgagggaatttgacctgtaatgttgttagaggaaa 232  Q
    ||||||||||||| ||| |||  || ||||| ||||| |||||| |||| |||||| || | |||||| |||| ||| ||||| | ||||||||||||||    
T  37712115 attgggccaactagtttgttatctgctaaatataaatgagaaagatgaggtagatgaaaaagtgatgatggaacttggcctgttaggttgttagaggaaa 37712214  T

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Target: chr5; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 133 - 225
Target Start/End: Original strand, 37640363 - 37640455
Alignment:
Q  133 attgggccaactaatttattaaatgataaatctaaataagaaagttgagctagatggaacaatgatgagggaatttgacctgtaatgttgtta 225  Q
    ||||||||||||| ||| ||| ||| ||||| ||||| |||||| |||| |||||| || | |||||| |||| ||| ||||| | |||||||    
T  37640363 attgggccaactagtttgttatatgctaaatataaatgagaaagatgaggtagatgaaaaagtgatgatggaacttggcctgttaggttgtta 37640455  T

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Target: chr3 (Bit Score: 51; Significance: 3e-20; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 15 - 129
Target Start/End: Original strand, 14553463 - 14553577
Alignment:
Q  15 cctgtgaggtggttgtcactgaggtacaactctaataaagaaaacaaataataacaccaatgaggatttgttccatctaacatgttattatttaaatcca 114  Q
    ||||||||||||||||| |||||| | |||||||| || |||  |||| ||||||||||||| ||| ||||||||| ||||||||||| | |||||||||    
T  14553463 cctgtgaggtggttgtcgctgagggataactctaacaacgaaggcaaagaataacaccaatgtggaattgttccatttaacatgttataacttaaatcca 14553562  T
Q  115 caatactcaattttg 129  Q
    ||   ||||||||||    
T  14553563 catagctcaattttg 14553577  T

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Target: chr4 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 24 - 104
Target Start/End: Complemental strand, 24217538 - 24217458
Alignment:
Q  24 tggttgtcactgaggtacaactctaataaagaaaacaaataataacaccaatgaggatttgttccatctaacatgttatta 104  Q
    ||||||||||| || | ||||||||| || |||  |||  |||||||||| || ||| ||||||||| |||||||||||||    
T  24217538 tggttgtcactaagatccaactctaacaacgaaggcaaggaataacaccattgcggaattgttccatttaacatgttatta 24217458  T

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