View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17404_high_6 (Length: 300)
Name: NF17404_high_6
Description: NF17404
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17404_high_6 |
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Alignment Details
Target: chr1 (Bit Score: 207; Significance: 1e-113; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 24 - 286
Target Start/End: Complemental strand, 49713307 - 49713045
Alignment:
| Q |
24 |
agagagacaaacctggatcacattttgcagaatgaactctatcagtgcagtaacacctgaaactgtatacatctttatcaaagccacaccttcctccagt |
123 |
Q |
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| T |
49713307 |
agagagacaaacctgtatcacattttgcagaatgaactctatcagtgcagtaacacctgaaactgtatacatctttatcaaagccacaccttcctccagt |
49713208 |
T |
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| Q |
124 |
gctgctgcactcggaacagtcactggcaatccaattcaaccggaacccatttctcagtgactcttcaatccctcctttcacaccattttccaccatcgca |
223 |
Q |
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| T |
49713207 |
gctgttacactcattgcaatcactagctatccaattcaaccgaaccccatttctcagtgactcttcaatccctcctttcacaacattttccaccatcgca |
49713108 |
T |
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| Q |
224 |
taaaccacttcatccctgcaattctttgacaccaagcttgcatttttatcatcaccatacaat |
286 |
Q |
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| T |
49713107 |
taaaccacttcatccctgcaattctttgacaccaagcttgcatttttatcatcgccatacaat |
49713045 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 11 - 286
Target Start/End: Complemental strand, 49655798 - 49655523
Alignment:
| Q |
11 |
caaaggggaattaagagagacaaacctggatcacattttgcagaatgaactctatcagtgcagtaacacctgaaactgtatacatctttatcaaagccac |
110 |
Q |
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| T |
49655798 |
caaaggggaattaagagagacaaacctgtatcacattttgcagaatgaactctatcagtgcagtaacacttgaaattgtatacatctttatcaaagccac |
49655699 |
T |
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| Q |
111 |
accttcctccagtgctgctgcactcggaacagtcactggcaatccaattcaaccggaacccatttctcagtgactcttcaatccctcctttcacaccatt |
210 |
Q |
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| T |
49655698 |
accttcctccagtgctgttacactcattgcaatcactagctatccaattcaacctaaacccatttctcagtgactcttcaatccctcctttcacaacatt |
49655599 |
T |
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| Q |
211 |
ttccaccatcgcataaaccacttcatccctgcaattctttgacaccaagcttgcatttttatcatcaccatacaat |
286 |
Q |
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||||||| ||| || || ||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||| |
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| T |
49655598 |
ttccaccctcgtattaatcacttcatccctgcaattctttgacaccaggcttgcatttttatcatcatcatacaat |
49655523 |
T |
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