View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17404_low_1 (Length: 777)
Name: NF17404_low_1
Description: NF17404
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17404_low_1 |
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Alignment Details
Target: chr6 (Bit Score: 112; Significance: 3e-56; HSPs: 6)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 112; E-Value: 3e-56
Query Start/End: Original strand, 525 - 736
Target Start/End: Original strand, 5940602 - 5940810
Alignment:
| Q |
525 |
ttacattgaaacacataatttactaatttatcggcataactttttccgtctttgaaaatgtgagaaactctatagcgaaaccttttgatgaaattcaaac |
624 |
Q |
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| T |
5940602 |
ttacattgaaacacataatttactaatttatcagcgtaactttttctgtctttaaaaatatgagaaa-tctacgacgaaaccttttgatgaagg-caaac |
5940699 |
T |
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| Q |
625 |
aatttaactactcattctaaatttgtcagggcaacaatgaaaagtattcaaaggcattatcaatgatcatgcaatcacattccaaccataaattaaacca |
724 |
Q |
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| T |
5940700 |
aatttaactaccggttctaaatttgtcggggcaccaatgaaaagttatcaaaggcgtta-caatgatcatgaaatcacattccaaccataaattaaacca |
5940798 |
T |
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| Q |
725 |
acctatttataa |
736 |
Q |
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|||||||||||| |
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| T |
5940799 |
acctatttataa |
5940810 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 106; E-Value: 1e-52
Query Start/End: Original strand, 36 - 299
Target Start/End: Original strand, 5938634 - 5938906
Alignment:
| Q |
36 |
gtgaaaatggagaaaggatgggacatggatttactgcacttgatgaaatcatgc---------agtcactcagatttaatctttcaattcatccaaagct |
126 |
Q |
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| T |
5938634 |
gtgaaaatagagaaaggatgggacatgaatttactgcacttgatgaaatcttgccggtgcttcagtcactcagatttaacctttcaattcatccaaagct |
5938733 |
T |
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| Q |
127 |
caacattttaacatggcatctcaaaaacaaaccacactatgacacaaaaaatttccttattatttctcacaaaatatttga--tctctcctcttattttc |
224 |
Q |
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| T |
5938734 |
cggcattttaacatggcatctcaaaaacaaaccaccctcccacacaaaaaatttcc---ttctttctcacagaatattttacctctctcctcttatattt |
5938830 |
T |
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| Q |
225 |
catgattatg-nnnnnnncgaatccaacttatatattcagtttaaagcttaaaattgcaaaacattaacaaaatta |
299 |
Q |
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| T |
5938831 |
cttgattgtgttttttgttgaatccaacttatctattcaatttaaagcctaaaattgcaaaacattaacaaaatta |
5938906 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 87; E-Value: 3e-41
Query Start/End: Original strand, 361 - 476
Target Start/End: Original strand, 5938988 - 5939105
Alignment:
| Q |
361 |
ccatttgcgtatctccattgaattttaatatttccatataaaaactaattctcaatagac--gttttgtgtagcatttttatctgaaatgaaattctgaa |
458 |
Q |
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| T |
5938988 |
ccatttccgtatctccattgaattttactattttcatataaaaactaattctcaatagacatgttttgtgtagcatttttatctgaaatgaaattctgaa |
5939087 |
T |
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| Q |
459 |
tgtgccagaccaatttcc |
476 |
Q |
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| T |
5939088 |
tgggccacaccaatttcc |
5939105 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 83; E-Value: 7e-39
Query Start/End: Original strand, 617 - 763
Target Start/End: Original strand, 5945025 - 5945171
Alignment:
| Q |
617 |
attcaaacaatttaactactcattctaaatttgtcagggcaacaatgaaaagtattcaaaggcattatcaatgatcatgcaatcacattccaaccataaa |
716 |
Q |
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| T |
5945025 |
attcaaacaatttaactaccggttctaaatttgttagggtaccaattgtaagttatcaaaggcattatcaatgatcatggaatcacattccaaccataaa |
5945124 |
T |
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| Q |
717 |
ttaaaccaacctatttataagtttaaattacttaaataagaagaaac |
763 |
Q |
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| T |
5945125 |
ttaaaccaacctatttataactttaaattagttaaatgagatgaaac |
5945171 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 478 - 522
Target Start/End: Original strand, 5939149 - 5939193
Alignment:
| Q |
478 |
tataattttgttaaggttttgcaatttatacttaaaaaggaaaga |
522 |
Q |
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| T |
5939149 |
tataattttgttaaggttttgcaatttataattaaaaatgaaaga |
5939193 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 275 - 317
Target Start/End: Complemental strand, 5939175 - 5939133
Alignment:
| Q |
275 |
aaattgcaaaacattaacaaaattataaaactttcatctcaaa |
317 |
Q |
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| T |
5939175 |
aaattgcaaaaccttaacaaaattataaacttttcatctcaaa |
5939133 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 62; Significance: 2e-26; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 525 - 594
Target Start/End: Original strand, 21785126 - 21785195
Alignment:
| Q |
525 |
ttacattgaaacacataatttactaatttatcggcataactttttccgtctttgaaaatgtgagaaactc |
594 |
Q |
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| T |
21785126 |
ttacattgaaacacataatttactaatttatcggcataactttttccatctttaaaaatgtgagaaactc |
21785195 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 567 - 632
Target Start/End: Complemental strand, 2611736 - 2611671
Alignment:
| Q |
567 |
tttccgtctttgaaaatgtgagaaactctatagcgaaaccttttgatgaaattcaaacaatttaac |
632 |
Q |
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| T |
2611736 |
tttccctctttgaaaatgcgagaaactctaaaacgaaactttttcataagattcaaacattttaac |
2611671 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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