View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17404_low_12 (Length: 236)
Name: NF17404_low_12
Description: NF17404
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17404_low_12 |
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Alignment Details
Target: chr2 (Bit Score: 179; Significance: 1e-96; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 179; E-Value: 1e-96
Query Start/End: Original strand, 1 - 222
Target Start/End: Complemental strand, 7291679 - 7291459
Alignment:
| Q |
1 |
tattctcataacgttccccgacttcaaggatttactttctaaggccttcaaagagtacatggctttggaattgcatattataaataacccagttgacgac |
100 |
Q |
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| T |
7291679 |
tattctcataacgttccccgacttcaaggatttactttctaaggccttcaaagactacatggctttggaattgcatattataaataacccagttgacgac |
7291580 |
T |
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| Q |
101 |
aagaaaagatcgttgatgaaagcaattgctcagatgaattatctaatggataatcttcggaattatctttgtgaagnnnnnnnnnncgaaaagaaacacc |
200 |
Q |
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| T |
7291579 |
aagaaaagatcgttgatgaaagcaattgctcagatgaataatctaatggataatcttcggaattatctttgtgaag-aaaaaaaaacgaaaagaaacacc |
7291481 |
T |
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| Q |
201 |
cgatgatgatccatattgatct |
222 |
Q |
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|||||||||||||||||||||| |
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| T |
7291480 |
cgatgatgatccatattgatct |
7291459 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 20 - 133
Target Start/End: Complemental strand, 7298463 - 7298347
Alignment:
| Q |
20 |
gacttcaaggatttactttctaaggccttcaaagagtacatggctttggaattgcatattataaataacccagttgac---gacaagaaaagatcgttga |
116 |
Q |
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|||||||||||| |||||||||||||| ||||||| ||||||| ||| || |||||||||| |||||| || ||| ||| ||||| |||||||| |
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| T |
7298463 |
gacttcaaggatctactttctaaggccgtcaaagactacatggatttcagatgtcatattataactaacccggtcgacaatgacgagaaacaatcgttga |
7298364 |
T |
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| Q |
117 |
tgaaagcaattgctcag |
133 |
Q |
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|||| |||||||||||| |
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| T |
7298363 |
tgaatgcaattgctcag |
7298347 |
T |
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