View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17404_low_14 (Length: 217)
Name: NF17404_low_14
Description: NF17404
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17404_low_14 |
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Alignment Details
Target: chr7 (Bit Score: 106; Significance: 3e-53; HSPs: 6)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 106; E-Value: 3e-53
Query Start/End: Original strand, 18 - 123
Target Start/End: Original strand, 8458776 - 8458881
Alignment:
| Q |
18 |
gtaattggagatgttttgaatccctttacaaattcagtgtctttgaggattgtttatgacaatatataacaaagaagccaccaagagttcaagttggtgg |
117 |
Q |
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| T |
8458776 |
gtaattggagatgttttgaatccctttacaaattcagtgtctttgaggattgtttatgacaatatataacaaagaagccaccaagagttcaagttggtgg |
8458875 |
T |
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| Q |
118 |
aaatga |
123 |
Q |
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|||||| |
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| T |
8458876 |
aaatga |
8458881 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 140 - 200
Target Start/End: Original strand, 8459293 - 8459353
Alignment:
| Q |
140 |
catcttgtaaacaattgtcattttgtttcctgaaatttcaatcactaaacgttaagagtat |
200 |
Q |
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| T |
8459293 |
catcttgtaaacaattttcattttgtttcctgaaatttcaatcactaaacgttaagagtat |
8459353 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 18 - 81
Target Start/End: Complemental strand, 776544 - 776481
Alignment:
| Q |
18 |
gtaattggagatgttttgaatccctttacaaattcagtgtctttgaggattgtttatgacaata |
81 |
Q |
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| T |
776544 |
gtaattggagatgttttggatccctttacaaattcagtgtctttgagggtcgtttatgaaaata |
776481 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 18 - 81
Target Start/End: Complemental strand, 817826 - 817763
Alignment:
| Q |
18 |
gtaattggagatgttttgaatccctttacaaattcagtgtctttgaggattgtttatgacaata |
81 |
Q |
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| T |
817826 |
gtaattggagaggttttggacccctttacaagttcagtgtctttgagagtcgtttatgacaata |
817763 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 136 - 186
Target Start/End: Complemental strand, 776023 - 775973
Alignment:
| Q |
136 |
ttcacatcttgtaaacaattgtcattttgtttcctgaaatttcaatcacta |
186 |
Q |
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||||||||| | |||||||||| ||||||||||||||||||||||| |||| |
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| T |
776023 |
ttcacatctagcaaacaattgtaattttgtttcctgaaatttcaataacta |
775973 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 95 - 123
Target Start/End: Complemental strand, 776430 - 776402
Alignment:
| Q |
95 |
ccaccaagagttcaagttggtggaaatga |
123 |
Q |
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| T |
776430 |
ccaccaagagttcaagttggtggaaatga |
776402 |
T |
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