View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17404_low_4 (Length: 405)
Name: NF17404_low_4
Description: NF17404
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17404_low_4 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 322; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 322; E-Value: 0
Query Start/End: Original strand, 31 - 405
Target Start/End: Complemental strand, 49224304 - 49223924
Alignment:
| Q |
31 |
gtagtcaccattctataaatagctgatattaaaaccaaactaataatataaccaatttttactgagcaagacatggcttctactggtgatcctgagtaca |
130 |
Q |
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| T |
49224304 |
gtagtcaccattctataaatagctgatattaaaaccaaactaata---taaccaatttttactgagcaagacatggcttctactggtgatcctgagtaca |
49224208 |
T |
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| Q |
131 |
aatcatc---------ggctccggcttcttcggttggtgttgatcactctaagtttgatttgatcctaaggtttctgttgtttgcagcatcagtggcatc |
221 |
Q |
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| T |
49224207 |
aatcatcttcaactccggctccggcttcttcggttggtgttgatcactctaagtttgatttgatcctaaggtttctgttgtttgcagcatcagtggcatc |
49224108 |
T |
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| Q |
222 |
agttgttgtgatggttactggtaatcaaacagaatatctacctctgccacaatcagccaagtttagatactcaccagcctttgtgtaagttttgcatgat |
321 |
Q |
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| T |
49224107 |
agttgttgtgatggttactggtaatcaaacagtatatctacctgtgccacgaccagccaagtttagatactcaccagcctttgtgtaagttttgcatgat |
49224008 |
T |
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| Q |
322 |
aacaactattaagtttgctaagtctgctaagttttatgtttgttatatatgtgtctgcttattttagttatttgcaatattctt |
405 |
Q |
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| T |
49224007 |
aacaactattaagtttgctaagtctgctaagttttatgtttgttatatatgtgtctgcttattttagttatttgcaatattctt |
49223924 |
T |
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