View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17404_low_5 (Length: 373)
Name: NF17404_low_5
Description: NF17404
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17404_low_5 |
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Alignment Details
Target: chr6 (Bit Score: 307; Significance: 1e-173; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 307; E-Value: 1e-173
Query Start/End: Original strand, 1 - 343
Target Start/End: Complemental strand, 34860942 - 34860600
Alignment:
| Q |
1 |
catcaaaccctaggaaagaaggacgaatttgctatcttcaccttgacttggatctttagtagttttgaagttgatatacgacatatgaacctatatatta |
100 |
Q |
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| T |
34860942 |
catcaaagcataggaaagaagtaggaattcgttatcttcaccttgacttggatctttagtagttttgaagttgatatacgacatatgaacctatatatta |
34860843 |
T |
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| Q |
101 |
gcatatgaaaattgttgctcacttgtttgactaaaaaattctaataattttgtttttattttgatatatgatttggatctttagttatgttgaagttcat |
200 |
Q |
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| T |
34860842 |
gcttatgaaaattgttgctcacttgtttgactaaaaaattctaataattttgtttttattttgatatatgatttggatctttagttatgttgaagttcat |
34860743 |
T |
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| Q |
201 |
atatgacatgtgaacttatattttagcttattcaaattgttgtgcacttgtttgactcaaaaatgataatatttttgtttgaaagtggattatagattta |
300 |
Q |
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| T |
34860742 |
atatgacatgtgaacttatattttagcttattcaaattgttgtgcacttgtttgactcaaaaatgataatatttttgtttgaaagtggattatagattta |
34860643 |
T |
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| Q |
301 |
gggtgcagggaaatacatgatgaagcttatatgtgtaagttga |
343 |
Q |
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| T |
34860642 |
gcctgcagggaaatacatgatgaagcttatatgtgtaagttga |
34860600 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 167 - 304
Target Start/End: Complemental strand, 19745778 - 19745640
Alignment:
| Q |
167 |
tatgatttggatctttagttatgttgaagttcatatatgacatgtgaacttatattttagcttattcaaattgttgtgcacttgtttgactcaaaaatga |
266 |
Q |
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| T |
19745778 |
tatgatttggatatttagttatgttgaagtttatatatgatatattaacttatatatcgtcttatgcaaatggttgtttacttgtttgattcataaatga |
19745679 |
T |
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| Q |
267 |
taatatttttg-tttgaaagtggattatagatttagggt |
304 |
Q |
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| T |
19745678 |
taatgttgtagttttaaaagaggatgatagatttagggt |
19745640 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 167 - 206
Target Start/End: Original strand, 24023073 - 24023112
Alignment:
| Q |
167 |
tatgatttggatctttagttatgttgaagttcatatatga |
206 |
Q |
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| T |
24023073 |
tatgacttggatctttatttatgttgaagttcatatatga |
24023112 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 252 - 326
Target Start/End: Original strand, 2242244 - 2242318
Alignment:
| Q |
252 |
ttgactcaaaaatgataatatttttgtttgaaagtggattatagatttagggtgcagggaaatacatgatgaagc |
326 |
Q |
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| T |
2242244 |
ttgactcaaaaattctaatatttttgttttgaagaggatcatagatttaggatggatacaaatacatgatgaagc |
2242318 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 80 - 128
Target Start/End: Original strand, 36341389 - 36341437
Alignment:
| Q |
80 |
gacatatgaacctatatattagcatatgaaaattgttgctcacttgttt |
128 |
Q |
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||||||||||| ||| ||||||| |||| ||||||||| |||||||||| |
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| T |
36341389 |
gacatatgaacttatgtattagcttatgtaaattgttgttcacttgttt |
36341437 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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