View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17404_low_6 (Length: 363)
Name: NF17404_low_6
Description: NF17404
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17404_low_6 |
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Alignment Details
Target: chr6 (Bit Score: 303; Significance: 1e-170; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 303; E-Value: 1e-170
Query Start/End: Original strand, 16 - 350
Target Start/End: Complemental strand, 6070027 - 6069693
Alignment:
| Q |
16 |
aaagaaaacacatgcccatctattagcacttgattcaaaaccttgtcaatgaaatggaaatctatggatcaaaaatggaaaatacatgcaataaccttgt |
115 |
Q |
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| T |
6070027 |
aaagaaaacacatgcccatctattaccacttgattcaaaaccttgtcaatgaaatggaaatctatggatcaaaaatggaaaatacatgcaataacctcgt |
6069928 |
T |
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| Q |
116 |
gttaatgtttgcgagatattgatttagcgataagagtttaaagttatagtctcaagagacggagttcaaattctatctaaaaaaggagtaaaactgaaaa |
215 |
Q |
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| T |
6069927 |
gttaatgtttgcgagatattgatttagcgataagagtttgaagttatagtctcaagagacggagttcaaattctatctaaaaaagtagtaaaactgaaaa |
6069828 |
T |
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| Q |
216 |
tcatcacttttagttaattgcaattttcaccttccccaattttttaaaaaataaacctcatttttattgatgattaatgaattagttttgttaaattaag |
315 |
Q |
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|| ||||||||||||||| |||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6069827 |
tcgtcacttttagttaatggcaattttcaccttccccgatttttttaaaaataaacctcatttttattgatgattaatgaattagttttgttaaattaag |
6069728 |
T |
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| Q |
316 |
tcatagtatacaaaatgtatcatatatattttcta |
350 |
Q |
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||||||||||||||||||||||||||||||||||| |
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| T |
6069727 |
tcatagtatacaaaatgtatcatatatattttcta |
6069693 |
T |
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