View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17405_high_1 (Length: 707)

Name: NF17405_high_1
Description: NF17405
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17405_high_1
NF17405_high_1
[»] chr8 (1 HSPs)
chr8 (24-707)||(4505342-4506025)


Alignment Details
Target: chr8 (Bit Score: 620; Significance: 0; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 620; E-Value: 0
Query Start/End: Original strand, 24 - 707
Target Start/End: Complemental strand, 4506025 - 4505342
Alignment:
Q  24 cttgtgctgaataaagaggtgctacatgtttagtacaccatatgatgttgtctcaattgttatgtgagtgtatgtttcaaaggttgattaatgttttctt 123  Q
    |||||||||||||||||||| |||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4506025 cttgtgctgaataaagaggtactacatgtttagtacaccatatgtggttgtctcaattgttatgtgagtgtatgtttcaaaggttgattaatgttttctt 4505926  T
Q  124 tagagttatttgttttagaggcgcttttgagttatcatgtaaaataaattatttacttcttattgcaaaattatgagtccgacctcatcattaccattga 223  Q
    | |||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4505925 ttgagttatttgttttagaggctcttttgagttattatgtaaaataaattatttacttcttattgcaaaattatgagtccgacctcatcattaccattga 4505826  T
Q  224 ggatacctaaagccgtgtatatacttccttctttaagttccaaaatttctgataaaaaataccattaggtttcatgttttttatgtcttgattgatttct 323  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  4505825 ggatacctaaagccgtgtatatacttccttctttaagttccaaaatttctgataaaaaataccattaggtttcatgttttttatgtcttgattgattttt 4505726  T
Q  324 tcctctggaaactccatccctaataaattcttcaaattatcaatgattctaccttgaacaacttgagtagactccttagtattatttggattgcttgcag 423  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||| ||    
T  4505725 tcctctggaaactccatccctaataaattcttcaaattatcaatgattctcccttgaacaacttgagtagactccttagtattatttggattacttgaag 4505626  T
Q  424 tgaagatgtcttgaaaatgtctgattagtatgttcctaatgtccacaacattagtagcaaccccattagcatcattgtgaatcttaattttacttttatt 523  Q
    ||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  4505625 tgaagatgtcttgaaaatgtctgatcagtatgttcctaatttccacaacattagtagcaacaccattagcatcattgtgaatcttaattttacttttatt 4505526  T
Q  524 atgtctttgcatgactttgatgagtatttttaacaccatttttaagccaagatgattttgctcttttactccatcagtttcgtgatccaaaatattatcc 623  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  4505525 atgtctttgcatgactttgatgagtatttttaacaccatttttaagccaagatgattttgctctttgactccatcagtttcgtgatccaaaatattatcc 4505426  T
Q  624 atacgagttttgaaatcttcggctctatcaattacctcttcagtttggattttagtgtgaagcttactaagttgctttgagtct 707  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  4505425 atacgggttttgaaatcttcggctctatcaattacctcttcagtttggattttagtgtgaagattactaagttgctttgagtct 4505342  T

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