View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17405_low_2 (Length: 372)
Name: NF17405_low_2
Description: NF17405
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17405_low_2 |
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Alignment Details
Target: chr3 (Bit Score: 209; Significance: 1e-114; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 18 - 327
Target Start/End: Original strand, 1030073 - 1030383
Alignment:
| Q |
18 |
tcatgcaggtagcaatttgtgagcaaacgtctagaagaatattgcacgatgttgcaccactcattacaagaaaatctactatttgacaaggaagaaatcc |
117 |
Q |
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| T |
1030073 |
tcatgcgggtagcaatttgtgagcaaacgtctagaagaatattgcaggatgttgcaccactcactacaagaaaatctactatttgacaaagaagaaatcc |
1030172 |
T |
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| Q |
118 |
ttgagaaaagtatcgtatgaaaatccttgtgaaacaaacatttaccacggtttaaattacgatgga-agaccaaaactgacaacttttaaacataaagag |
216 |
Q |
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| T |
1030173 |
ttgagaaaagtatcgtatgaaaatccttgtgaaacaaacatttaccacggtttaaattacgatggatagaccaaaactaacaa-ttttaaacataaagag |
1030271 |
T |
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| Q |
217 |
attaagtccgcaaaatgnnnnnnncagggtatcgaaactacaattaaacacttaaaattccat--nnnnnnnngtacttttgttaattcacaaaaatatt |
314 |
Q |
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| T |
1030272 |
atcaagtccgcaaaatgaaaaaaaca-ggtatcgaaactacaattaaacacttaaaattccataaaaaaaaaagtacttttgttaattcacaaaaatatt |
1030370 |
T |
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| Q |
315 |
gttccattttaac |
327 |
Q |
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| T |
1030371 |
gttccattttaac |
1030383 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 320 - 361
Target Start/End: Original strand, 1031010 - 1031051
Alignment:
| Q |
320 |
attttaaccaccatttacaattttgataatatattttcctat |
361 |
Q |
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| T |
1031010 |
attttaaccaccgtttacaattttgataatatattttcctat |
1031051 |
T |
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