View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17405_low_4 (Length: 331)
Name: NF17405_low_4
Description: NF17405
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17405_low_4 |
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Alignment Details
Target: chr4 (Bit Score: 294; Significance: 1e-165; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 294; E-Value: 1e-165
Query Start/End: Original strand, 18 - 315
Target Start/End: Complemental strand, 35072262 - 35071965
Alignment:
| Q |
18 |
atgtctatgataccaggcaacaacatcccttttgagaattccccattctctacttcaatccaagaattttcacgagaaaatccaattttcctcaacaacc |
117 |
Q |
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| T |
35072262 |
atgtctatgataccaggcaacaacagcccttttgagaattccccattctctacttcaatccaagaattttcacgagaaaatccaattttcctcaacaacc |
35072163 |
T |
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| Q |
118 |
agattgattggaaggaaactccagaagcccatgtattcaaagctgatgtaccagggctgaacaaagaggaagtgaaagttgaggttgaagatggaagagt |
217 |
Q |
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| T |
35072162 |
agattgattggaaggaaactccagaagcccatgtattcaaagctgatgtaccagggctgaacaaagaggaagtgaaagttgaggttgaagatggaagagt |
35072063 |
T |
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| Q |
218 |
gcttcagataacaggagagaggagcatggagagacaagatacaaatgatggatgtcagcgtgttgagcgtagtagtggtaaattcatgaggagtttta |
315 |
Q |
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| T |
35072062 |
gcttcagataacaggagagaggagcatggagagacaagatacaaatgatggatgtcagcgtgttgagcgtagtagtggtaaattcatgaggagtttta |
35071965 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 119 - 315
Target Start/End: Complemental strand, 35073001 - 35072805
Alignment:
| Q |
119 |
gattgattggaaggaaactccagaagcccatgtattcaaagctgatgtaccagggctgaacaaagaggaagtgaaagttgaggttgaagatggaagagtg |
218 |
Q |
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| T |
35073001 |
gattgattggaaggagaccccagaagctcatgtgttcaaggctgatcttcctggactgaagaaggaggaagtgaaggttgaaattgaagatgatagggtt |
35072902 |
T |
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| Q |
219 |
cttcagataacaggagagaggagcatggagagacaagatacaaatgatggatgtcagcgtgttgagcgtagtagtggtaaattcatgaggagtttta |
315 |
Q |
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| T |
35072901 |
cttcagataagcggtgagaggaacattgaaaaagaagataagaatgatcaatggcatcgtgtggagcgtagcagtggaaaattcatgaggaggttta |
35072805 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 119 - 315
Target Start/End: Original strand, 35106859 - 35107055
Alignment:
| Q |
119 |
gattgattggaaggaaactccagaagcccatgtattcaaagctgatgtaccagggctgaacaaagaggaagtgaaagttgaggttgaagatggaagagtg |
218 |
Q |
| |
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||||||||||||||| || |||||||| ||||| ||||| |||||| | || || ||||| || ||||||||||| ||||| ||||||||| || || |
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| T |
35106859 |
gattgattggaaggagaccccagaagctcatgtgttcaaggctgatcttcctggactgaagaaggaggaagtgaaggttgaaattgaagatgatagggtt |
35106958 |
T |
|
| Q |
219 |
cttcagataacaggagagaggagcatggagagacaagatacaaatgatggatgtcagcgtgttgagcgtagtagtggtaaattcatgaggagtttta |
315 |
Q |
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| T |
35106959 |
cttcagataagcggtgagaggaactttgaaaaagaagataagaatgatcaatggcatcgtgtggagcgtagcagtggaaaattcatgaggaggttta |
35107055 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 119 - 240
Target Start/End: Complemental strand, 36296774 - 36296653
Alignment:
| Q |
119 |
gattgattggaaggaaactccagaagcccatgtattcaaagctgatgtaccagggctgaacaaagaggaagtgaaagttgaggttgaagatggaagagtg |
218 |
Q |
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||||||||||||||| || |||||||| || || || ||||||||| | || || ||||| || || |||||||| ||||| ||||||||| ||||| |
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| T |
36296774 |
gattgattggaaggagaccccagaagcacacgtgtttaaagctgatcttcctggactgaagaaggaagaagtgaaggttgaaattgaagatgacagagtt |
36296675 |
T |
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| Q |
219 |
cttcagataacaggagagagga |
240 |
Q |
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|||||||| | |||||||||| |
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| T |
36296674 |
cttcagattagtggagagagga |
36296653 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 123 - 315
Target Start/End: Complemental strand, 24041053 - 24040861
Alignment:
| Q |
123 |
gattggaaggaaactccagaagcccatgtattcaaagctgatgtaccagggctgaacaaagaggaagtgaaagttgaggttgaagatggaagagtgcttc |
222 |
Q |
| |
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||||||||||| || |||||||| ||||| ||||| |||||| | || || ||||| || || |||||||| ||||| ||||||||| || || |||| |
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| T |
24041053 |
gattggaaggagaccccagaagcacatgtgttcaaggctgatcttcctggactgaagaaggaagaagtgaaggttgaaattgaagatgatagggttcttc |
24040954 |
T |
|
| Q |
223 |
agataacaggagagaggagcatggagagacaagatacaaatgatggatgtcagcgtgttgagcgtagtagtggtaaattcatgaggagtttta |
315 |
Q |
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|||||| || ||||||| | | || | | |||||| |||||| ||| || ||||| |||||||| ||||| |||||||||||||| |||| |
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| T |
24040953 |
agataagcggtgagaggaacgttgaaaaagaagataagaatgatcaatggcatcgtgtggagcgtagcagtggaaaattcatgaggaggttta |
24040861 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 119 - 240
Target Start/End: Complemental strand, 24014500 - 24014379
Alignment:
| Q |
119 |
gattgattggaaggaaactccagaagcccatgtattcaaagctgatgtaccagggctgaacaaagaggaagtgaaagttgaggttgaagatggaagagtg |
218 |
Q |
| |
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||||||||||||||| || |||||||| ||||| ||||| |||||| | || || ||||| || ||||||||||| ||||| |||||| || || || |
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| T |
24014500 |
gattgattggaaggagaccccagaagcacatgtgttcaaggctgatcttcctggactgaagaaggaggaagtgaaggttgaaattgaaggtgatagggtt |
24014401 |
T |
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| Q |
219 |
cttcagataacaggagagagga |
240 |
Q |
| |
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|||||||||| |||||||||| |
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| T |
24014400 |
cttcagataagcggagagagga |
24014379 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 129 - 210
Target Start/End: Original strand, 3123082 - 3123163
Alignment:
| Q |
129 |
aaggaaactccagaagcccatgtattcaaagctgatgtaccagggctgaacaaagaggaagtgaaagttgaggttgaagatg |
210 |
Q |
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|||||||||| |||||| ||||| |||||||||||| | |||||| |||| || || || ||||| ||||| ||||||||| |
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| T |
3123082 |
aaggaaactctagaagcacatgtgttcaaagctgatcttccagggttgaagaaggaagaggtgaaggttgaaattgaagatg |
3123163 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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