View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17405_low_5 (Length: 268)

Name: NF17405_low_5
Description: NF17405
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17405_low_5
NF17405_low_5
[»] chr2 (6 HSPs)
chr2 (4-208)||(27894709-27894913)
chr2 (211-253)||(43015553-43015595)
chr2 (211-244)||(10477580-10477613)
chr2 (213-249)||(27990390-27990426)
chr2 (213-249)||(28076923-28076959)
chr2 (213-253)||(43019306-43019346)
[»] chr5 (12 HSPs)
chr5 (211-253)||(1982726-1982768)
chr5 (211-251)||(18693712-18693752)
chr5 (210-253)||(2472343-2472386)
chr5 (211-253)||(2472490-2472532)
chr5 (211-253)||(6914872-6914914)
chr5 (211-253)||(12937942-12937984)
chr5 (211-253)||(12952093-12952135)
chr5 (211-253)||(15153891-15153933)
chr5 (211-253)||(16802215-16802257)
chr5 (211-253)||(16802349-16802391)
chr5 (211-253)||(32780142-32780184)
chr5 (211-253)||(37371071-37371113)
[»] chr4 (8 HSPs)
chr4 (211-253)||(44664386-44664428)
chr4 (211-253)||(15317716-15317758)
chr4 (211-253)||(23203022-23203064)
chr4 (215-253)||(26202278-26202316)
chr4 (211-253)||(26202446-26202488)
chr4 (211-253)||(34457628-34457670)
chr4 (211-253)||(41690103-41690145)
chr4 (211-251)||(936230-936270)
[»] chr3 (10 HSPs)
chr3 (211-253)||(30838530-30838572)
chr3 (211-253)||(12105373-12105415)
chr3 (211-253)||(19283748-19283790)
chr3 (215-253)||(19283921-19283959)
chr3 (211-253)||(23886130-23886172)
chr3 (211-253)||(23886886-23886928)
chr3 (211-253)||(46987339-46987381)
chr3 (211-253)||(46988529-46988571)
chr3 (211-253)||(51214226-51214268)
chr3 (213-253)||(7575538-7575578)
[»] chr1 (10 HSPs)
chr1 (211-253)||(32823472-32823514)
chr1 (215-253)||(20171222-20171260)
chr1 (211-253)||(25865968-25866010)
chr1 (211-253)||(25866732-25866774)
chr1 (211-249)||(33941331-33941369)
chr1 (211-253)||(39193595-39193637)
chr1 (211-253)||(51760053-51760095)
chr1 (211-253)||(52370997-52371039)
chr1 (211-251)||(3978058-3978098)
chr1 (213-253)||(28999856-28999896)
[»] chr8 (13 HSPs)
chr8 (213-253)||(4675768-4675808)
chr8 (214-253)||(29441633-29441672)
chr8 (211-253)||(3271174-3271216)
chr8 (211-253)||(3272085-3272127)
chr8 (211-253)||(3612643-3612685)
chr8 (211-253)||(4675938-4675980)
chr8 (211-253)||(15989158-15989200)
chr8 (211-253)||(21551936-21551978)
chr8 (215-253)||(21552109-21552147)
chr8 (211-253)||(21552982-21553024)
chr8 (215-253)||(21553155-21553193)
chr8 (211-253)||(39349499-39349541)
chr8 (211-253)||(40102235-40102277)
[»] chr7 (7 HSPs)
chr7 (211-249)||(1884254-1884292)
chr7 (211-253)||(10338373-10338415)
chr7 (211-253)||(18670563-18670605)
chr7 (211-253)||(29754746-29754788)
chr7 (211-253)||(35088022-35088064)
chr7 (211-253)||(37725893-37725935)
chr7 (211-253)||(43704622-43704664)
[»] chr6 (6 HSPs)
chr6 (211-253)||(5999643-5999685)
chr6 (211-253)||(12202211-12202253)
chr6 (211-253)||(12203331-12203373)
chr6 (211-253)||(17916529-17916571)
chr6 (211-253)||(21749862-21749904)
chr6 (211-251)||(26581967-26582007)


Alignment Details
Target: chr2 (Bit Score: 193; Significance: 1e-105; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 4 - 208
Target Start/End: Original strand, 27894709 - 27894913
Alignment:
Q  4 agtgatatgaaatgataatgaataagtggaactgaacttagggctgtggaatcgttttggtgtgaaattgattagaatcaggaattttcagatgaatatt 103  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  27894709 agtgatgtgaaatgataatgaataagtggaactgaacttagggctgtggaatcgttttggtgtgaaattgattagaatcaggaattttcagatgagtatt 27894808  T
Q  104 attcgaatgagtaagaatttgattcgaataaatcaccttacatgacaacccaaggggataaatgattcaaataactcattactaactcccaaacacaata 203  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27894809 attcgaatcagtaagaatttgattcgaataaatcaccttacatgacaacccaaggggataaatgattcaaataactcattactaactcccaaacacaata 27894908  T
Q  204 gacta 208  Q
    |||||    
T  27894909 gacta 27894913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 211 - 253
Target Start/End: Original strand, 43015553 - 43015595
Alignment:
Q  211 tcccttaacttctttttgaattttattttggtccattaacttt 253  Q
    ||||||||||| ||||||||||| |||||||||| ||||||||    
T  43015553 tcccttaacttatttttgaatttcattttggtcccttaacttt 43015595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 211 - 244
Target Start/End: Complemental strand, 10477613 - 10477580
Alignment:
Q  211 tcccttaacttctttttgaattttattttggtcc 244  Q
    ||||||||||| ||||||||||||||||||||||    
T  10477613 tcccttaacttatttttgaattttattttggtcc 10477580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 213 - 249
Target Start/End: Original strand, 27990390 - 27990426
Alignment:
Q  213 ccttaacttctttttgaattttattttggtccattaa 249  Q
    ||||||||| |||||||||||||||||||||| ||||    
T  27990390 ccttaacttatttttgaattttattttggtcccttaa 27990426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 213 - 249
Target Start/End: Original strand, 28076923 - 28076959
Alignment:
Q  213 ccttaacttctttttgaattttattttggtccattaa 249  Q
    ||||||||| |||||||||||||||||||||| ||||    
T  28076923 ccttaacttatttttgaattttattttggtcccttaa 28076959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 213 - 253
Target Start/End: Complemental strand, 43019346 - 43019306
Alignment:
Q  213 ccttaacttctttttgaattttattttggtccattaacttt 253  Q
    ||||||||| ||||||||||| |||||||||| ||||||||    
T  43019346 ccttaacttatttttgaatttcattttggtcccttaacttt 43019306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 35; Significance: 0.00000000009; HSPs: 12)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 211 - 253
Target Start/End: Original strand, 1982726 - 1982768
Alignment:
Q  211 tcccttaacttctttttgaattttattttggtccattaacttt 253  Q
    ||||||||||| |||||||||||||||||||||| ||||||||    
T  1982726 tcccttaacttatttttgaattttattttggtcccttaacttt 1982768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 211 - 251
Target Start/End: Original strand, 18693712 - 18693752
Alignment:
Q  211 tcccttaacttctttttgaattttattttggtccattaact 251  Q
    ||||||||||| |||||||||||||||||||||| ||||||    
T  18693712 tcccttaacttatttttgaattttattttggtcccttaact 18693752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 210 - 253
Target Start/End: Original strand, 2472343 - 2472386
Alignment:
Q  210 ctcccttaacttctttttgaattttattttggtccattaacttt 253  Q
    |||||||||||| ||||||||||| |||||||||| ||||||||    
T  2472343 ctcccttaacttatttttgaatttcattttggtcccttaacttt 2472386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 211 - 253
Target Start/End: Complemental strand, 2472532 - 2472490
Alignment:
Q  211 tcccttaacttctttttgaattttattttggtccattaacttt 253  Q
    ||||||||||| ||||||||||| |||||||||| ||||||||    
T  2472532 tcccttaacttatttttgaatttcattttggtcccttaacttt 2472490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 211 - 253
Target Start/End: Complemental strand, 6914914 - 6914872
Alignment:
Q  211 tcccttaacttctttttgaattttattttggtccattaacttt 253  Q
    ||||||||||| ||||||||||| |||||||||| ||||||||    
T  6914914 tcccttaacttatttttgaatttcattttggtcccttaacttt 6914872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 211 - 253
Target Start/End: Complemental strand, 12937984 - 12937942
Alignment:
Q  211 tcccttaacttctttttgaattttattttggtccattaacttt 253  Q
    ||||||||||| ||||||||||| |||||||||| ||||||||    
T  12937984 tcccttaacttatttttgaatttcattttggtcccttaacttt 12937942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 211 - 253
Target Start/End: Complemental strand, 12952135 - 12952093
Alignment:
Q  211 tcccttaacttctttttgaattttattttggtccattaacttt 253  Q
    ||||||||||| ||||||||||| |||||||||| ||||||||    
T  12952135 tcccttaacttatttttgaatttcattttggtcccttaacttt 12952093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 211 - 253
Target Start/End: Original strand, 15153891 - 15153933
Alignment:
Q  211 tcccttaacttctttttgaattttattttggtccattaacttt 253  Q
    ||||||||||| ||||||||||||| |||||||| ||||||||    
T  15153891 tcccttaacttatttttgaattttaatttggtcctttaacttt 15153933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 211 - 253
Target Start/End: Original strand, 16802215 - 16802257
Alignment:
Q  211 tcccttaacttctttttgaattttattttggtccattaacttt 253  Q
    ||||||||||| ||||||||||| |||||||||| ||||||||    
T  16802215 tcccttaacttatttttgaatttcattttggtcccttaacttt 16802257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 211 - 253
Target Start/End: Complemental strand, 16802391 - 16802349
Alignment:
Q  211 tcccttaacttctttttgaattttattttggtccattaacttt 253  Q
    ||||||||||| ||||||||||| |||||||||| ||||||||    
T  16802391 tcccttaacttatttttgaatttcattttggtcccttaacttt 16802349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 211 - 253
Target Start/End: Complemental strand, 32780184 - 32780142
Alignment:
Q  211 tcccttaacttctttttgaattttattttggtccattaacttt 253  Q
    ||||||||||| ||||||||||| |||||||||| ||||||||    
T  32780184 tcccttaacttatttttgaatttcattttggtcccttaacttt 32780142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 211 - 253
Target Start/End: Original strand, 37371071 - 37371113
Alignment:
Q  211 tcccttaacttctttttgaattttattttggtccattaacttt 253  Q
    ||||||||||| ||||||||||| |||||||||| ||||||||    
T  37371071 tcccttaacttatttttgaatttcattttggtcccttaacttt 37371113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 35; Significance: 0.00000000009; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 211 - 253
Target Start/End: Complemental strand, 44664428 - 44664386
Alignment:
Q  211 tcccttaacttctttttgaattttattttggtccattaacttt 253  Q
    ||||||||||| |||||| ||||||||||||||||||||||||    
T  44664428 tcccttaacttatttttggattttattttggtccattaacttt 44664386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 211 - 253
Target Start/End: Original strand, 15317716 - 15317758
Alignment:
Q  211 tcccttaacttctttttgaattttattttggtccattaacttt 253  Q
    ||||||||||| ||||||||||| |||||||||| ||||||||    
T  15317716 tcccttaacttatttttgaatttcattttggtcccttaacttt 15317758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 211 - 253
Target Start/End: Complemental strand, 23203064 - 23203022
Alignment:
Q  211 tcccttaacttctttttgaattttattttggtccattaacttt 253  Q
    ||||||||||| ||||||||||| |||||||||| ||||||||    
T  23203064 tcccttaacttatttttgaatttcattttggtcccttaacttt 23203022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 215 - 253
Target Start/End: Original strand, 26202278 - 26202316
Alignment:
Q  215 ttaacttctttttgaattttattttggtccattaacttt 253  Q
    ||||||| |||||||||||||||||||||| ||||||||    
T  26202278 ttaacttatttttgaattttattttggtcccttaacttt 26202316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 211 - 253
Target Start/End: Complemental strand, 26202488 - 26202446
Alignment:
Q  211 tcccttaacttctttttgaattttattttggtccattaacttt 253  Q
    ||||||||||| ||||||||||| |||||||||| ||||||||    
T  26202488 tcccttaacttatttttgaatttcattttggtcccttaacttt 26202446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 211 - 253
Target Start/End: Complemental strand, 34457670 - 34457628
Alignment:
Q  211 tcccttaacttctttttgaattttattttggtccattaacttt 253  Q
    |||||||| || |||||||||||||||||||||| ||||||||    
T  34457670 tcccttaatttatttttgaattttattttggtcccttaacttt 34457628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 211 - 253
Target Start/End: Complemental strand, 41690145 - 41690103
Alignment:
Q  211 tcccttaacttctttttgaattttattttggtccattaacttt 253  Q
    ||||| ||||| |||||||||||||||||||||| ||||||||    
T  41690145 tccctcaacttatttttgaattttattttggtcccttaacttt 41690103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 211 - 251
Target Start/End: Original strand, 936230 - 936270
Alignment:
Q  211 tcccttaacttctttttgaattttattttggtccattaact 251  Q
    ||||||||||| |||||| ||||||||||||||| ||||||    
T  936230 tcccttaacttatttttggattttattttggtcccttaact 936270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 35; Significance: 0.00000000009; HSPs: 10)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 211 - 253
Target Start/End: Complemental strand, 30838572 - 30838530
Alignment:
Q  211 tcccttaacttctttttgaattttattttggtccattaacttt 253  Q
    ||||||||||| |||||||||||||||||||||| ||||||||    
T  30838572 tcccttaacttatttttgaattttattttggtcccttaacttt 30838530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 211 - 253
Target Start/End: Original strand, 12105373 - 12105415
Alignment:
Q  211 tcccttaacttctttttgaattttattttggtccattaacttt 253  Q
    ||||||||||| ||||||||||| |||||||||| ||||||||    
T  12105373 tcccttaacttatttttgaatttcattttggtcccttaacttt 12105415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 211 - 253
Target Start/End: Original strand, 19283748 - 19283790
Alignment:
Q  211 tcccttaacttctttttgaattttattttggtccattaacttt 253  Q
    ||||||||||| ||||||||||| |||||||||| ||||||||    
T  19283748 tcccttaacttatttttgaatttcattttggtcccttaacttt 19283790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 215 - 253
Target Start/End: Complemental strand, 19283959 - 19283921
Alignment:
Q  215 ttaacttctttttgaattttattttggtccattaacttt 253  Q
    ||||||| |||||||||||||||||||||| ||||||||    
T  19283959 ttaacttatttttgaattttattttggtcccttaacttt 19283921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 211 - 253
Target Start/End: Original strand, 23886130 - 23886172
Alignment:
Q  211 tcccttaacttctttttgaattttattttggtccattaacttt 253  Q
    ||||||||||| ||||||||||| |||||||||| ||||||||    
T  23886130 tcccttaacttatttttgaatttcattttggtcccttaacttt 23886172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 211 - 253
Target Start/End: Complemental strand, 23886928 - 23886886
Alignment:
Q  211 tcccttaacttctttttgaattttattttggtccattaacttt 253  Q
    ||||||||||| ||||||||||| |||||||||| ||||||||    
T  23886928 tcccttaacttatttttgaatttcattttggtcccttaacttt 23886886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 211 - 253
Target Start/End: Original strand, 46987339 - 46987381
Alignment:
Q  211 tcccttaacttctttttgaattttattttggtccattaacttt 253  Q
    ||||||||||| ||||||||||| |||||||||| ||||||||    
T  46987339 tcccttaacttatttttgaatttcattttggtcccttaacttt 46987381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 211 - 253
Target Start/End: Complemental strand, 46988571 - 46988529
Alignment:
Q  211 tcccttaacttctttttgaattttattttggtccattaacttt 253  Q
    ||||||||||| ||||||||||| |||||||||| ||||||||    
T  46988571 tcccttaacttatttttgaatttcattttggtcccttaacttt 46988529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 211 - 253
Target Start/End: Complemental strand, 51214268 - 51214226
Alignment:
Q  211 tcccttaacttctttttgaattttattttggtccattaacttt 253  Q
    ||||||||||| ||||||||||| |||||||||| ||||||||    
T  51214268 tcccttaacttatttttgaatttcattttggtcccttaacttt 51214226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 213 - 253
Target Start/End: Complemental strand, 7575578 - 7575538
Alignment:
Q  213 ccttaacttctttttgaattttattttggtccattaacttt 253  Q
    ||||||||| ||||||||||| |||||||||| ||||||||    
T  7575578 ccttaacttatttttgaatttcattttggtcccttaacttt 7575538  T

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Target: chr1 (Bit Score: 35; Significance: 0.00000000009; HSPs: 10)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 211 - 253
Target Start/End: Original strand, 32823472 - 32823514
Alignment:
Q  211 tcccttaacttctttttgaattttattttggtccattaacttt 253  Q
    ||||||||||| |||||||||||||||||||||| ||||||||    
T  32823472 tcccttaacttatttttgaattttattttggtcccttaacttt 32823514  T

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Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 215 - 253
Target Start/End: Complemental strand, 20171260 - 20171222
Alignment:
Q  215 ttaacttctttttgaattttattttggtccattaacttt 253  Q
    ||||||| |||||||||||||||||||||| ||||||||    
T  20171260 ttaacttatttttgaattttattttggtcccttaacttt 20171222  T

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Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 211 - 253
Target Start/End: Original strand, 25865968 - 25866010
Alignment:
Q  211 tcccttaacttctttttgaattttattttggtccattaacttt 253  Q
    ||||||||||| ||||||||||| |||||||||| ||||||||    
T  25865968 tcccttaacttatttttgaatttcattttggtcccttaacttt 25866010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 211 - 253
Target Start/End: Complemental strand, 25866774 - 25866732
Alignment:
Q  211 tcccttaacttctttttgaattttattttggtccattaacttt 253  Q
    ||||||||||| ||||||||||| |||||||||| ||||||||    
T  25866774 tcccttaacttatttttgaatttcattttggtcccttaacttt 25866732  T

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Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 211 - 249
Target Start/End: Original strand, 33941331 - 33941369
Alignment:
Q  211 tcccttaacttctttttgaattttattttggtccattaa 249  Q
    ||||||||||| |||||||||||||||||||||| ||||    
T  33941331 tcccttaacttatttttgaattttattttggtcctttaa 33941369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 211 - 253
Target Start/End: Original strand, 39193595 - 39193637
Alignment:
Q  211 tcccttaacttctttttgaattttattttggtccattaacttt 253  Q
    ||||||||||| ||||| |||||||||||||||| ||||||||    
T  39193595 tcccttaacttattttttaattttattttggtcccttaacttt 39193637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 211 - 253
Target Start/End: Original strand, 51760053 - 51760095
Alignment:
Q  211 tcccttaacttctttttgaattttattttggtccattaacttt 253  Q
    ||||||||||| ||||||||||| |||||||||| ||||||||    
T  51760053 tcccttaacttatttttgaatttcattttggtcccttaacttt 51760095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 211 - 253
Target Start/End: Original strand, 52370997 - 52371039
Alignment:
Q  211 tcccttaacttctttttgaattttattttggtccattaacttt 253  Q
    ||||||||||| ||||||||||| |||||||||| ||||||||    
T  52370997 tcccttaacttatttttgaatttcattttggtcccttaacttt 52371039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 211 - 251
Target Start/End: Original strand, 3978058 - 3978098
Alignment:
Q  211 tcccttaacttctttttgaattttattttggtccattaact 251  Q
    ||||||||||| ||||||||||| |||||||||| ||||||    
T  3978058 tcccttaacttatttttgaatttcattttggtcctttaact 3978098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 213 - 253
Target Start/End: Original strand, 28999856 - 28999896
Alignment:
Q  213 ccttaacttctttttgaattttattttggtccattaacttt 253  Q
    ||||||||| ||||||||||| |||||||||| ||||||||    
T  28999856 ccttaacttatttttgaatttcattttggtcccttaacttt 28999896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 33; Significance: 0.000000001; HSPs: 13)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 213 - 253
Target Start/End: Original strand, 4675768 - 4675808
Alignment:
Q  213 ccttaacttctttttgaattttattttggtccattaacttt 253  Q
    ||||||||| |||||||||||||||||||||| ||||||||    
T  4675768 ccttaacttatttttgaattttattttggtcccttaacttt 4675808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 214 - 253
Target Start/End: Original strand, 29441633 - 29441672
Alignment:
Q  214 cttaacttctttttgaattttattttggtccattaacttt 253  Q
    |||||||| |||||||||||||||||||||| ||||||||    
T  29441633 cttaacttatttttgaattttattttggtcccttaacttt 29441672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 211 - 253
Target Start/End: Original strand, 3271174 - 3271216
Alignment:
Q  211 tcccttaacttctttttgaattttattttggtccattaacttt 253  Q
    ||||||||||| ||||||||||| |||||||||| ||||||||    
T  3271174 tcccttaacttatttttgaatttcattttggtcccttaacttt 3271216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 211 - 253
Target Start/End: Complemental strand, 3272127 - 3272085
Alignment:
Q  211 tcccttaacttctttttgaattttattttggtccattaacttt 253  Q
    ||||||||||| ||||||||||| |||||||||| ||||||||    
T  3272127 tcccttaacttatttttgaatttcattttggtcccttaacttt 3272085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 211 - 253
Target Start/End: Complemental strand, 3612685 - 3612643
Alignment:
Q  211 tcccttaacttctttttgaattttattttggtccattaacttt 253  Q
    ||||||||||| |||||||||||||||||||||  ||||||||    
T  3612685 tcccttaacttatttttgaattttattttggtctcttaacttt 3612643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 211 - 253
Target Start/End: Complemental strand, 4675980 - 4675938
Alignment:
Q  211 tcccttaacttctttttgaattttattttggtccattaacttt 253  Q
    ||||| ||||| |||||||||||||||||||||| ||||||||    
T  4675980 tccctcaacttatttttgaattttattttggtcccttaacttt 4675938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 211 - 253
Target Start/End: Original strand, 15989158 - 15989200
Alignment:
Q  211 tcccttaacttctttttgaattttattttggtccattaacttt 253  Q
    ||||||||||| ||||||||||| |||||||||| ||||||||    
T  15989158 tcccttaacttatttttgaatttcattttggtcccttaacttt 15989200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 211 - 253
Target Start/End: Original strand, 21551936 - 21551978
Alignment:
Q  211 tcccttaacttctttttgaattttattttggtccattaacttt 253  Q
    ||||||||||| ||||||||||| |||||||||| ||||||||    
T  21551936 tcccttaacttatttttgaatttcattttggtcccttaacttt 21551978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 215 - 253
Target Start/End: Complemental strand, 21552147 - 21552109
Alignment:
Q  215 ttaacttctttttgaattttattttggtccattaacttt 253  Q
    ||||||| |||||||||||||||||||||| ||||||||    
T  21552147 ttaacttatttttgaattttattttggtcccttaacttt 21552109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 211 - 253
Target Start/End: Original strand, 21552982 - 21553024
Alignment:
Q  211 tcccttaacttctttttgaattttattttggtccattaacttt 253  Q
    ||||||||||| ||||||||||| |||||||||| ||||||||    
T  21552982 tcccttaacttatttttgaatttcattttggtcccttaacttt 21553024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 215 - 253
Target Start/End: Complemental strand, 21553193 - 21553155
Alignment:
Q  215 ttaacttctttttgaattttattttggtccattaacttt 253  Q
    ||||||| |||||||||||||||||||||| ||||||||    
T  21553193 ttaacttatttttgaattttattttggtcccttaacttt 21553155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 211 - 253
Target Start/End: Complemental strand, 39349541 - 39349499
Alignment:
Q  211 tcccttaacttctttttgaattttattttggtccattaacttt 253  Q
    ||||||||||| ||||||||||| |||||||||| ||||||||    
T  39349541 tcccttaacttatttttgaatttcattttggtcccttaacttt 39349499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 211 - 253
Target Start/End: Original strand, 40102235 - 40102277
Alignment:
Q  211 tcccttaacttctttttgaattttattttggtccattaacttt 253  Q
    ||||||||||| ||||||||||| |||||||||| ||||||||    
T  40102235 tcccttaacttatttttgaatttcattttggtcctttaacttt 40102277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 31; Significance: 0.00000002; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 211 - 249
Target Start/End: Original strand, 1884254 - 1884292
Alignment:
Q  211 tcccttaacttctttttgaattttattttggtccattaa 249  Q
    ||||||||||| |||||||||||||||||||||| ||||    
T  1884254 tcccttaacttatttttgaattttattttggtcccttaa 1884292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 211 - 253
Target Start/End: Complemental strand, 10338415 - 10338373
Alignment:
Q  211 tcccttaacttctttttgaattttattttggtccattaacttt 253  Q
    ||||||||||| ||||||||||| |||||||||| ||||||||    
T  10338415 tcccttaacttatttttgaatttcattttggtcccttaacttt 10338373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 211 - 253
Target Start/End: Complemental strand, 18670605 - 18670563
Alignment:
Q  211 tcccttaacttctttttgaattttattttggtccattaacttt 253  Q
    ||||||||||| |||||| ||||||||||||||| ||||||||    
T  18670605 tcccttaacttatttttggattttattttggtcccttaacttt 18670563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 211 - 253
Target Start/End: Complemental strand, 29754788 - 29754746
Alignment:
Q  211 tcccttaacttctttttgaattttattttggtccattaacttt 253  Q
    ||||||||||| ||||||||||| |||||||||| ||||||||    
T  29754788 tcccttaacttatttttgaatttcattttggtcccttaacttt 29754746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 211 - 253
Target Start/End: Complemental strand, 35088064 - 35088022
Alignment:
Q  211 tcccttaacttctttttgaattttattttggtccattaacttt 253  Q
    ||||||||||| |||||||||||||||||||||  ||||||||    
T  35088064 tcccttaacttatttttgaattttattttggtcttttaacttt 35088022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 211 - 253
Target Start/End: Original strand, 37725893 - 37725935
Alignment:
Q  211 tcccttaacttctttttgaattttattttggtccattaacttt 253  Q
    ||||||||||| ||||||||||| |||||||||| ||||||||    
T  37725893 tcccttaacttatttttgaatttcattttggtcccttaacttt 37725935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 211 - 253
Target Start/End: Original strand, 43704622 - 43704664
Alignment:
Q  211 tcccttaacttctttttgaattttattttggtccattaacttt 253  Q
    ||||||||||| ||||||||||| |||||||||| ||||||||    
T  43704622 tcccttaacttatttttgaatttcattttggtcccttaacttt 43704664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 31; Significance: 0.00000002; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 211 - 253
Target Start/End: Complemental strand, 5999685 - 5999643
Alignment:
Q  211 tcccttaacttctttttgaattttattttggtccattaacttt 253  Q
    ||||||||||| ||||||||||| |||||||||| ||||||||    
T  5999685 tcccttaacttatttttgaatttcattttggtcccttaacttt 5999643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 211 - 253
Target Start/End: Original strand, 12202211 - 12202253
Alignment:
Q  211 tcccttaacttctttttgaattttattttggtccattaacttt 253  Q
    ||||||||||| ||||||||||| |||||||||| ||||||||    
T  12202211 tcccttaacttatttttgaatttcattttggtcccttaacttt 12202253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 211 - 253
Target Start/End: Complemental strand, 12203373 - 12203331
Alignment:
Q  211 tcccttaacttctttttgaattttattttggtccattaacttt 253  Q
    ||||||||||| ||||||||||| |||||||||| ||||||||    
T  12203373 tcccttaacttatttttgaatttcattttggtcctttaacttt 12203331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 211 - 253
Target Start/End: Complemental strand, 17916571 - 17916529
Alignment:
Q  211 tcccttaacttctttttgaattttattttggtccattaacttt 253  Q
    ||||||||||| ||||||||||| |||||||||| ||||||||    
T  17916571 tcccttaacttatttttgaatttcattttggtcccttaacttt 17916529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 211 - 253
Target Start/End: Complemental strand, 21749904 - 21749862
Alignment:
Q  211 tcccttaacttctttttgaattttattttggtccattaacttt 253  Q
    ||||||||||| ||||||||||| |||||||||| ||||||||    
T  21749904 tcccttaacttatttttgaatttcattttggtcccttaacttt 21749862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 211 - 251
Target Start/End: Original strand, 26581967 - 26582007
Alignment:
Q  211 tcccttaacttctttttgaattttattttggtccattaact 251  Q
    ||||||||||| |||||| ||||||||||||||| ||||||    
T  26581967 tcccttaacttatttttggattttattttggtcccttaact 26582007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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