View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17405_low_6 (Length: 231)
Name: NF17405_low_6
Description: NF17405
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17405_low_6 |
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Alignment Details
Target: chr1 (Bit Score: 168; Significance: 3e-90; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 168; E-Value: 3e-90
Query Start/End: Original strand, 18 - 193
Target Start/End: Original strand, 42163224 - 42163399
Alignment:
| Q |
18 |
taattactgtggtaaaaatgcacaagtatttattgcatcaatttgaaaaatcttaccagaattgtgtttgcttcctttgcaagtttcagcataccaacat |
117 |
Q |
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| T |
42163224 |
taattactgtggtaaaaatgcacaagtaattattgcatcaatttgaaaaatcttaccagaattgtgtttgcttcctttgcaagtttcagcataccaacat |
42163323 |
T |
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| Q |
118 |
tatcaggagtgatgaagtattcattctcctcaatatccacaccctagcaaaaacacaattactaattatgcctatg |
193 |
Q |
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| T |
42163324 |
tatcaggagtgatgaagtattcattatcctcaatatccacaccctagcaaaaacacaattactaattatgcctatg |
42163399 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 78 - 169
Target Start/End: Original strand, 5480177 - 5480268
Alignment:
| Q |
78 |
attgtgtttgcttcctttgcaagtttcagcataccaacattatcaggagtgatgaagtattcattctcctcaatatccacaccctagcaaaa |
169 |
Q |
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| T |
5480177 |
attgtatttgcttcctttgccagcttaagcataccaacattgtcagcagtgataaagtactcattgtccaaaacctccacaccctaccaaaa |
5480268 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 63; Significance: 2e-27; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 70 - 172
Target Start/End: Complemental strand, 47170962 - 47170860
Alignment:
| Q |
70 |
ttaccagaattgtgtttgcttcctttgcaagtttcagcataccaacattatcaggagtgatgaagtattcattctcctcaatatccacaccctagcaaaa |
169 |
Q |
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| T |
47170962 |
ttaccaaaattgtattagcttcctttgcgagtttcagcataccaacattatcaggagtgatgaaatattcattgtcctcagtctccacgccctagaaaaa |
47170863 |
T |
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| Q |
170 |
aca |
172 |
Q |
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| T |
47170862 |
aca |
47170860 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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