View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17406_high_6 (Length: 355)
Name: NF17406_high_6
Description: NF17406
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17406_high_6 |
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| [»] scaffold0036 (2 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 320; Significance: 1e-180; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 320; E-Value: 1e-180
Query Start/End: Original strand, 1 - 348
Target Start/End: Complemental strand, 24992622 - 24992275
Alignment:
| Q |
1 |
tagagtgaatatatgtgtaattttgttggtgtggtattaggattacatgcattcttataagtcttatttttaatttaatatgcaaagagtttcatacaat |
100 |
Q |
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| T |
24992622 |
tagagtgaatatatgtgtaattttgttggtgtagtattaggattacatgcattcttataagccttatttttaatttaatatgcaaagagtttcatacaat |
24992523 |
T |
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| Q |
101 |
cgtttagtgttaacggtgaagtgttattggtggtcataacacaaacattggggtggtctcgttttttattgtttttaaggtggtgattttgtattttgag |
200 |
Q |
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| T |
24992522 |
cgtttagtgttaacggtgaagtgttattggtggtcgtaacacaaacattggggtggtctcgttttttattgtttttaaggtggtgattttgtattttgag |
24992423 |
T |
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| Q |
201 |
atccaggtgttggtcataaaggttgagggtgttgatgaggaggggcaaaaccgtgcgtcaattggtggtgatgtgatttcgttgggtgtcagttgtttgt |
300 |
Q |
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| T |
24992422 |
atccaggtgttgatcataaaggttgagggtattgatgaggaggggcaaaaacgtgcgtcaattggtggtgatgtgatttcgttgggtgtcagttgtttgt |
24992323 |
T |
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| Q |
301 |
ttctagaatctcgttttattttggttataaattggattatgtgatgat |
348 |
Q |
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| T |
24992322 |
ttctagaatctcgttttattttggttataaattggattatgtggtgat |
24992275 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 1 - 59
Target Start/End: Complemental strand, 25015145 - 25015087
Alignment:
| Q |
1 |
tagagtgaatatatgtgtaattttgttggtgtggtattaggattacatgcattcttata |
59 |
Q |
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| T |
25015145 |
tagagtgaatatatgtgtgattttgtcggtgtggtattaggattacatgcattcttata |
25015087 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 72; Significance: 1e-32; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 1 - 96
Target Start/End: Original strand, 33531854 - 33531949
Alignment:
| Q |
1 |
tagagtgaatatatgtgtaattttgttggtgtggtattaggattacatgcattcttataagtcttatttttaatttaatatgcaaagagtttcata |
96 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| | ||||||||||||| ||||||||||||||||||| |
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| T |
33531854 |
tagagtgaatatatgtgtaattttgttggtgtggtacaaggattacatgcattcttatatgccttatttttaattccatatgcaaagagtttcata |
33531949 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 72; Significance: 1e-32; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 1 - 96
Target Start/End: Complemental strand, 16869493 - 16869398
Alignment:
| Q |
1 |
tagagtgaatatatgtgtaattttgttggtgtggtattaggattacatgcattcttataagtcttatttttaatttaatatgcaaagagtttcata |
96 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| | ||||||||||||| ||||||||||||||||||| |
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| T |
16869493 |
tagagtgaatatatgtgtaattttgttggtgtggtacaaggattacatgcattcttatatgccttatttttaattccatatgcaaagagtttcata |
16869398 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 206 - 288
Target Start/End: Original strand, 16862942 - 16863025
Alignment:
| Q |
206 |
ggtgttggtcataaaggttgagggtgttgatgaggagg-ggcaaaaccgtgcgtcaattggtggtgatgtgatttcgttgggtg |
288 |
Q |
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| T |
16862942 |
ggtgttggcaataaaggttgagggtgttgacgaagaggaggcataaccgtatgtcaattggtggtggtgtgattttgttgggtg |
16863025 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0036 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: scaffold0036
Description:
Target: scaffold0036; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 260 - 343
Target Start/End: Complemental strand, 64745 - 64664
Alignment:
| Q |
260 |
aattggtggtgatgtgatttcgttgggtgtcagttgtttgtttctagaatctcgttttattttggttataaattggattatgtg |
343 |
Q |
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| T |
64745 |
aattggtggtggtgtaatt--gttgggtgctagttgttggtaactaaaatctcgtttgattttggttatcaattggattatgtg |
64664 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0036; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 260 - 343
Target Start/End: Complemental strand, 69886 - 69805
Alignment:
| Q |
260 |
aattggtggtgatgtgatttcgttgggtgtcagttgtttgtttctagaatctcgttttattttggttataaattggattatgtg |
343 |
Q |
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| T |
69886 |
aattggtggtggtgtaatt--gttgggtgctagttgttggtaactaaaatctcgtttgattttggttatcaattggattatgtg |
69805 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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