View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17406_high_9 (Length: 264)

Name: NF17406_high_9
Description: NF17406
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17406_high_9
NF17406_high_9
[»] chr4 (21 HSPs)
chr4 (144-249)||(44654797-44654902)
chr4 (144-244)||(44683601-44683701)
chr4 (128-249)||(44632931-44633046)
chr4 (128-249)||(44635796-44635911)
chr4 (1-40)||(11437816-11437855)
chr4 (2-40)||(16931631-16931669)
chr4 (2-40)||(16933988-16934026)
chr4 (1-40)||(22046526-22046566)
chr4 (5-40)||(2891745-2891780)
chr4 (1-40)||(3937126-3937165)
chr4 (5-40)||(6765300-6765335)
chr4 (1-40)||(11006094-11006133)
chr4 (1-40)||(11008408-11008447)
chr4 (5-40)||(16453761-16453796)
chr4 (5-40)||(16455679-16455714)
chr4 (1-40)||(18847605-18847644)
chr4 (1-40)||(22780212-22780251)
chr4 (5-40)||(22802577-22802612)
chr4 (1-40)||(44599680-44599719)
chr4 (1-40)||(47868855-47868894)
chr4 (8-40)||(3991827-3991859)
[»] chr1 (19 HSPs)
chr1 (1-41)||(47180113-47180153)
chr1 (1-40)||(47177762-47177801)
chr1 (1-41)||(24326062-24326102)
chr1 (1-40)||(9459277-9459316)
chr1 (1-40)||(9463104-9463143)
chr1 (1-40)||(16226568-16226607)
chr1 (1-40)||(16231963-16232002)
chr1 (1-40)||(23786239-23786278)
chr1 (5-41)||(2949078-2949114)
chr1 (1-41)||(23816284-23816324)
chr1 (1-41)||(47906665-47906705)
chr1 (1-40)||(8348905-8348944)
chr1 (5-40)||(16429352-16429387)
chr1 (5-40)||(39932479-39932514)
chr1 (1-40)||(46431548-46431587)
chr1 (1-40)||(51757934-51757973)
chr1 (5-42)||(25248396-25248433)
chr1 (5-38)||(25251123-25251156)
chr1 (5-37)||(9240937-9240969)
[»] chr5 (16 HSPs)
chr5 (1-42)||(3372975-3373016)
chr5 (1-40)||(31179213-31179252)
chr5 (1-41)||(2175300-2175342)
chr5 (1-40)||(10750099-10750137)
chr5 (1-40)||(10757575-10757613)
chr5 (1-40)||(15354414-15354453)
chr5 (1-40)||(15356690-15356729)
chr5 (1-40)||(23665445-23665484)
chr5 (1-40)||(23741697-23741736)
chr5 (1-40)||(23793103-23793142)
chr5 (5-40)||(27910837-27910872)
chr5 (5-40)||(34530559-34530594)
chr5 (1-40)||(38959972-38960011)
chr5 (5-40)||(41585580-41585615)
chr5 (1-41)||(10528936-10528977)
chr5 (1-40)||(15552645-15552685)
[»] chr3 (17 HSPs)
chr3 (1-41)||(38210750-38210790)
chr3 (1-40)||(747138-747177)
chr3 (1-40)||(10621366-10621405)
chr3 (1-40)||(50494378-50494417)
chr3 (1-40)||(6065633-6065672)
chr3 (1-40)||(9604447-9604486)
chr3 (1-40)||(25533803-25533842)
chr3 (5-40)||(28181382-28181417)
chr3 (1-40)||(28412870-28412909)
chr3 (1-40)||(53893893-53893932)
chr3 (1-42)||(10955865-10955905)
chr3 (1-40)||(3859890-3859930)
chr3 (8-40)||(17795637-17795669)
chr3 (8-40)||(19104077-19104109)
chr3 (8-40)||(23633830-23633862)
chr3 (8-40)||(28761287-28761319)
chr3 (8-40)||(31151722-31151754)
[»] scaffold0472 (1 HSPs)
scaffold0472 (1-40)||(6607-6646)
[»] chr8 (12 HSPs)
chr8 (1-40)||(24873039-24873078)
chr8 (5-40)||(33541255-33541290)
chr8 (1-40)||(3874448-3874487)
chr8 (5-40)||(14477705-14477740)
chr8 (1-40)||(18811163-18811202)
chr8 (1-40)||(18813337-18813376)
chr8 (1-40)||(28283062-28283101)
chr8 (1-40)||(43080057-43080096)
chr8 (1-40)||(43082428-43082467)
chr8 (8-41)||(21482766-21482799)
chr8 (1-41)||(28251409-28251450)
chr8 (5-41)||(15073167-15073203)
[»] chr7 (22 HSPs)
chr7 (1-40)||(1606788-1606827)
chr7 (1-40)||(20297771-20297810)
chr7 (1-40)||(25542937-25542976)
chr7 (1-40)||(28485974-28486013)
chr7 (1-40)||(38394395-38394434)
chr7 (1-41)||(9027033-9027073)
chr7 (1-40)||(11759536-11759575)
chr7 (5-40)||(13099317-13099352)
chr7 (1-40)||(20299869-20299908)
chr7 (1-40)||(22137488-22137527)
chr7 (1-40)||(25276527-25276566)
chr7 (1-40)||(31153691-31153730)
chr7 (1-40)||(40550238-40550277)
chr7 (1-40)||(40552515-40552554)
chr7 (1-39)||(28487962-28488000)
chr7 (1-40)||(7349117-7349157)
chr7 (1-40)||(7351491-7351531)
chr7 (4-40)||(20626445-20626481)
chr7 (4-40)||(20630336-20630372)
chr7 (4-40)||(20642755-20642791)
chr7 (8-40)||(24465943-24465975)
chr7 (1-40)||(40836583-40836623)
[»] chr6 (15 HSPs)
chr6 (1-40)||(8717195-8717234)
chr6 (1-40)||(11982872-11982911)
chr6 (1-40)||(12195354-12195393)
chr6 (1-40)||(26065961-26066000)
chr6 (1-40)||(26068235-26068274)
chr6 (1-40)||(29754549-29754588)
chr6 (1-40)||(4816071-4816110)
chr6 (5-40)||(15367463-15367498)
chr6 (1-40)||(26932403-26932442)
chr6 (5-43)||(13057624-13057662)
chr6 (5-42)||(9020363-9020400)
chr6 (5-38)||(22491044-22491077)
chr6 (1-40)||(5273055-5273095)
chr6 (1-40)||(19704403-19704443)
chr6 (8-40)||(25480314-25480346)
[»] chr2 (7 HSPs)
chr2 (1-40)||(36560981-36561020)
chr2 (1-40)||(45332020-45332059)
chr2 (1-41)||(35215432-35215472)
chr2 (5-40)||(11739421-11739456)
chr2 (1-40)||(35217810-35217849)
chr2 (1-40)||(36558721-36558760)
chr2 (8-41)||(22874487-22874520)
[»] scaffold1674 (1 HSPs)
scaffold1674 (1-38)||(1294-1331)
[»] scaffold0078 (1 HSPs)
scaffold0078 (8-40)||(23340-23372)
[»] scaffold0140 (2 HSPs)
scaffold0140 (1-40)||(22525-22564)
scaffold0140 (1-40)||(24800-24839)
[»] scaffold0127 (1 HSPs)
scaffold0127 (1-40)||(12715-12754)
[»] scaffold0131 (1 HSPs)
scaffold0131 (5-37)||(15404-15436)


Alignment Details
Target: chr4 (Bit Score: 50; Significance: 1e-19; HSPs: 21)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 144 - 249
Target Start/End: Complemental strand, 44654902 - 44654797
Alignment:
Q  144 aagcattataaaatcactacactcccatacgaatcagatacgaagtaggaggaatagaaactactcatgagttagagaaccctggagaagtccatcacga 243  Q
    ||||| ||||||||||| |||| |||| |  ||||||||| |||| ||||||| |||||  |||| ||||| ||||||||||||||||||||||||||||    
T  44654902 aagcactataaaatcaccacacccccacataaatcagatatgaagcaggaggagtagaagttactgatgagatagagaaccctggagaagtccatcacga 44654803  T
Q  244 aattgg 249  Q
    | ||||    
T  44654802 atttgg 44654797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 144 - 244
Target Start/End: Complemental strand, 44683701 - 44683601
Alignment:
Q  144 aagcattataaaatcactacactcccatacgaatcagatacgaagtaggaggaatagaaactactcatgagttagagaaccctggagaagtccatcacga 243  Q
    ||||| ||||||||||| ||||||||| |  |||||||||||||  ||||||| || ||  |||| ||||| ||||||||||||||||||||||||||||    
T  44683701 aagcactataaaatcaccacactcccacataaatcagatacgaaacaggaggagtaaaagttactgatgagatagagaaccctggagaagtccatcacga 44683602  T
Q  244 a 244  Q
    |    
T  44683601 a 44683601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 128 - 249
Target Start/End: Complemental strand, 44633046 - 44632931
Alignment:
Q  128 atactgcataaacataaagcattataaaatcactacactcccatacgaatcagatacgaagtaggaggaatagaaactactcatgagttagagaaccctg 227  Q
    |||||||| | ||||||| ||||| |||||||| ||||| |||||| ||||||||| ||||| |||||||||||| ||||| ||      ||||||||||    
T  44633046 atactgcagagacataaaacattaaaaaatcacaacacttccatacaaatcagatatgaagtgggaggaatagaagctactgat------gagaaccctg 44632953  T
Q  228 gagaagtccatcacgaaattgg 249  Q
    |||||||||||| |||| ||||    
T  44632952 gagaagtccatcgcgaatttgg 44632931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 128 - 249
Target Start/End: Original strand, 44635796 - 44635911
Alignment:
Q  128 atactgcataaacataaagcattataaaatcactacactcccatacgaatcagatacgaagtaggaggaatagaaactactcatgagttagagaaccctg 227  Q
    |||||||| | ||| ||||||||| ||||||||  |||||  ||||  ||||||||  ||||||||||||||||| ||||||||      ||||||||||    
T  44635796 atactgcagagacaaaaagcattaaaaaatcaccgcactcttatacagatcagataaaaagtaggaggaatagaagctactcat------gagaaccctg 44635889  T
Q  228 gagaagtccatcacgaaattgg 249  Q
    ||||||||| ||||||| ||||    
T  44635890 gagaagtccgtcacgaatttgg 44635911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 40
Target Start/End: Original strand, 11437816 - 11437855
Alignment:
Q  1 caagttgttattggtgtgatttttgatcgaattcacaaca 40  Q
    |||||||||||||||||||||||| |||||||||||||||    
T  11437816 caagttgttattggtgtgatttttcatcgaattcacaaca 11437855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 2 - 40
Target Start/End: Complemental strand, 16931669 - 16931631
Alignment:
Q  2 aagttgttattggtgtgatttttgatcgaattcacaaca 40  Q
    ||||||||||||||||||||||| |||||||||||||||    
T  16931669 aagttgttattggtgtgatttttcatcgaattcacaaca 16931631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 2 - 40
Target Start/End: Complemental strand, 16934026 - 16933988
Alignment:
Q  2 aagttgttattggtgtgatttttgatcgaattcacaaca 40  Q
    ||||||||||||||||||||||| |||||||||||||||    
T  16934026 aagttgttattggtgtgatttttcatcgaattcacaaca 16933988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 40
Target Start/End: Complemental strand, 22046566 - 22046526
Alignment:
Q  1 caagttgttattggtgtgattttt-gatcgaattcacaaca 40  Q
    |||||||||||||||||||||||| ||||||||||||||||    
T  22046566 caagttgttattggtgtgatttttcgatcgaattcacaaca 22046526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 5 - 40
Target Start/End: Original strand, 2891745 - 2891780
Alignment:
Q  5 ttgttattggtgtgatttttgatcgaattcacaaca 40  Q
    |||||||||||||||||||| |||||||||||||||    
T  2891745 ttgttattggtgtgatttttcatcgaattcacaaca 2891780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 40
Target Start/End: Complemental strand, 3937165 - 3937126
Alignment:
Q  1 caagttgttattggtgtgatttttgatcgaattcacaaca 40  Q
    |||||||||||||||||||||||| ||||||||| |||||    
T  3937165 caagttgttattggtgtgatttttcatcgaattcgcaaca 3937126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 5 - 40
Target Start/End: Original strand, 6765300 - 6765335
Alignment:
Q  5 ttgttattggtgtgatttttgatcgaattcacaaca 40  Q
    |||||||||||||||||||| |||||||||||||||    
T  6765300 ttgttattggtgtgatttttcatcgaattcacaaca 6765335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 40
Target Start/End: Complemental strand, 11006133 - 11006094
Alignment:
Q  1 caagttgttattggtgtgatttttgatcgaattcacaaca 40  Q
    |||||||||||||||||| |||| ||||||||||||||||    
T  11006133 caagttgttattggtgtgtttttcgatcgaattcacaaca 11006094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 40
Target Start/End: Complemental strand, 11008447 - 11008408
Alignment:
Q  1 caagttgttattggtgtgatttttgatcgaattcacaaca 40  Q
    |||||||||||||||||| |||| ||||||||||||||||    
T  11008447 caagttgttattggtgtgtttttcgatcgaattcacaaca 11008408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 5 - 40
Target Start/End: Original strand, 16453761 - 16453796
Alignment:
Q  5 ttgttattggtgtgatttttgatcgaattcacaaca 40  Q
    |||||||||||||||||||| |||||||||||||||    
T  16453761 ttgttattggtgtgatttttcatcgaattcacaaca 16453796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 5 - 40
Target Start/End: Original strand, 16455679 - 16455714
Alignment:
Q  5 ttgttattggtgtgatttttgatcgaattcacaaca 40  Q
    |||||||||||||||||||| |||||||||||||||    
T  16455679 ttgttattggtgtgatttttcatcgaattcacaaca 16455714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 40
Target Start/End: Original strand, 18847605 - 18847644
Alignment:
Q  1 caagttgttattggtgtgatttttgatcgaattcacaaca 40  Q
    ||||||||||||||||||||||||||||  ||||||||||    
T  18847605 caagttgttattggtgtgatttttgatcagattcacaaca 18847644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 40
Target Start/End: Complemental strand, 22780251 - 22780212
Alignment:
Q  1 caagttgttattggtgtgatttttgatcgaattcacaaca 40  Q
    |||||||||||||||||||||||| ||||||||| |||||    
T  22780251 caagttgttattggtgtgatttttcatcgaattcgcaaca 22780212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 5 - 40
Target Start/End: Complemental strand, 22802612 - 22802577
Alignment:
Q  5 ttgttattggtgtgatttttgatcgaattcacaaca 40  Q
    |||||||||||||||||||| |||||||||||||||    
T  22802612 ttgttattggtgtgatttttcatcgaattcacaaca 22802577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 40
Target Start/End: Complemental strand, 44599719 - 44599680
Alignment:
Q  1 caagttgttattggtgtgatttttgatcgaattcacaaca 40  Q
    |||||||||||||||||||||||| ||||||||| |||||    
T  44599719 caagttgttattggtgtgatttttcatcgaattcgcaaca 44599680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 40
Target Start/End: Original strand, 47868855 - 47868894
Alignment:
Q  1 caagttgttattggtgtgatttttgatcgaattcacaaca 40  Q
    |||||||||||||||||||||||| ||||||||| |||||    
T  47868855 caagttgttattggtgtgatttttcatcgaattcgcaaca 47868894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 8 - 40
Target Start/End: Complemental strand, 3991859 - 3991827
Alignment:
Q  8 ttattggtgtgatttttgatcgaattcacaaca 40  Q
    |||||||||||||||||| ||||||||||||||    
T  3991859 ttattggtgtgatttttgttcgaattcacaaca 3991827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 19)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 41
Target Start/End: Original strand, 47180113 - 47180153
Alignment:
Q  1 caagttgttattggtgtgatttttgatcgaattcacaacat 41  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  47180113 caagttgttattggtgtgatttttgatcgaattcacaacat 47180153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 1 - 40
Target Start/End: Original strand, 47177762 - 47177801
Alignment:
Q  1 caagttgttattggtgtgatttttgatcgaattcacaaca 40  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  47177762 caagttgttattggtgtgatttttgatcgaattcacaaca 47177801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 1 - 41
Target Start/End: Original strand, 24326062 - 24326102
Alignment:
Q  1 caagttgttattggtgtgatttttgatcgaattcacaacat 41  Q
    |||||||||||||||||||||||| ||||||||||||||||    
T  24326062 caagttgttattggtgtgatttttcatcgaattcacaacat 24326102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 40
Target Start/End: Complemental strand, 9459316 - 9459277
Alignment:
Q  1 caagttgttattggtgtgatttttgatcgaattcacaaca 40  Q
    |||||||||||||||||||||||| |||||||||||||||    
T  9459316 caagttgttattggtgtgatttttcatcgaattcacaaca 9459277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 40
Target Start/End: Complemental strand, 9463143 - 9463104
Alignment:
Q  1 caagttgttattggtgtgatttttgatcgaattcacaaca 40  Q
    |||||||||||||||||||||||| |||||||||||||||    
T  9463143 caagttgttattggtgtgatttttcatcgaattcacaaca 9463104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 40
Target Start/End: Original strand, 16226568 - 16226607
Alignment:
Q  1 caagttgttattggtgtgatttttgatcgaattcacaaca 40  Q
    |||||||||||||||||||||||| |||||||||||||||    
T  16226568 caagttgttattggtgtgatttttcatcgaattcacaaca 16226607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 40
Target Start/End: Original strand, 16231963 - 16232002
Alignment:
Q  1 caagttgttattggtgtgatttttgatcgaattcacaaca 40  Q
    |||||||||||||||||||||||| |||||||||||||||    
T  16231963 caagttgttattggtgtgatttttcatcgaattcacaaca 16232002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 40
Target Start/End: Original strand, 23786239 - 23786278
Alignment:
Q  1 caagttgttattggtgtgatttttgatcgaattcacaaca 40  Q
    |||||||||||||||||||||||| |||||||||||||||    
T  23786239 caagttgttattggtgtgatttttcatcgaattcacaaca 23786278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 5 - 41
Target Start/End: Complemental strand, 2949114 - 2949078
Alignment:
Q  5 ttgttattggtgtgatttttgatcgaattcacaacat 41  Q
    |||||||||||||||||||| ||||||||||||||||    
T  2949114 ttgttattggtgtgatttttcatcgaattcacaacat 2949078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 41
Target Start/End: Original strand, 23816284 - 23816324
Alignment:
Q  1 caagttgttattggtgtgatttttgatcgaattcacaacat 41  Q
    |||||||||||||||||||||||| ||||||||| ||||||    
T  23816284 caagttgttattggtgtgatttttcatcgaattcgcaacat 23816324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 41
Target Start/End: Original strand, 47906665 - 47906705
Alignment:
Q  1 caagttgttattggtgtgatttttgatcgaattcacaacat 41  Q
    |||||||||||||||||||||||| ||||||||| ||||||    
T  47906665 caagttgttattggtgtgatttttcatcgaattcgcaacat 47906705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 40
Target Start/End: Complemental strand, 8348944 - 8348905
Alignment:
Q  1 caagttgttattggtgtgatttttgatcgaattcacaaca 40  Q
    |||||| ||||||||||||||||| |||||||||||||||    
T  8348944 caagtttttattggtgtgatttttcatcgaattcacaaca 8348905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 5 - 40
Target Start/End: Original strand, 16429352 - 16429387
Alignment:
Q  5 ttgttattggtgtgatttttgatcgaattcacaaca 40  Q
    |||||||||||||||||||| |||||||||||||||    
T  16429352 ttgttattggtgtgatttttcatcgaattcacaaca 16429387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 5 - 40
Target Start/End: Original strand, 39932479 - 39932514
Alignment:
Q  5 ttgttattggtgtgatttttgatcgaattcacaaca 40  Q
    |||||||||||||||||||| |||||||||||||||    
T  39932479 ttgttattggtgtgatttttcatcgaattcacaaca 39932514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 40
Target Start/End: Complemental strand, 46431587 - 46431548
Alignment:
Q  1 caagttgttattggtgtgatttttgatcgaattcacaaca 40  Q
    |||||||||||||||||||||||| ||||||||| |||||    
T  46431587 caagttgttattggtgtgatttttcatcgaattcgcaaca 46431548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 40
Target Start/End: Original strand, 51757934 - 51757973
Alignment:
Q  1 caagttgttattggtgtgatttttgatcgaattcacaaca 40  Q
    ||||||||||||||||| |||||| |||||||||||||||    
T  51757934 caagttgttattggtgtcatttttcatcgaattcacaaca 51757973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 5 - 42
Target Start/End: Complemental strand, 25248433 - 25248396
Alignment:
Q  5 ttgttattggtgtgatttttgatcgaattcacaacatt 42  Q
    ||||||||| |||||||||| |||||||||||||||||    
T  25248433 ttgttattgttgtgatttttcatcgaattcacaacatt 25248396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 5 - 38
Target Start/End: Complemental strand, 25251156 - 25251123
Alignment:
Q  5 ttgttattggtgtgatttttgatcgaattcacaa 38  Q
    |||||||||||||||||||| |||||||||||||    
T  25251156 ttgttattggtgtgatttttcatcgaattcacaa 25251123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 5 - 37
Target Start/End: Complemental strand, 9240969 - 9240937
Alignment:
Q  5 ttgttattggtgtgatttttgatcgaattcaca 37  Q
    |||||||||||||||||||| ||||||||||||    
T  9240969 ttgttattggtgtgattttttatcgaattcaca 9240937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 38; Significance: 0.000000000002; HSPs: 16)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 3373016 - 3372975
Alignment:
Q  1 caagttgttattggtgtgatttttgatcgaattcacaacatt 42  Q
    |||||||||||||||||||||||| |||||||||||||||||    
T  3373016 caagttgttattggtgtgatttttcatcgaattcacaacatt 3372975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 40
Target Start/End: Complemental strand, 31179252 - 31179213
Alignment:
Q  1 caagttgttattggtgtgatttttgatcgaattcacaaca 40  Q
    |||||||||||||||||||||||| |||||||||||||||    
T  31179252 caagttgttattggtgtgatttttcatcgaattcacaaca 31179213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 41
Target Start/End: Original strand, 2175300 - 2175342
Alignment:
Q  1 caagttgttattggtgtga--tttttgatcgaattcacaacat 41  Q
    |||||||||||||||||||  ||||||||||||||||||||||    
T  2175300 caagttgttattggtgtgacttttttgatcgaattcacaacat 2175342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 40
Target Start/End: Original strand, 10750099 - 10750137
Alignment:
Q  1 caagttgttattggtgtgatttttgatcgaattcacaaca 40  Q
    ||||||||||||||||||| ||||||||||||||||||||    
T  10750099 caagttgttattggtgtga-ttttgatcgaattcacaaca 10750137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 40
Target Start/End: Original strand, 10757575 - 10757613
Alignment:
Q  1 caagttgttattggtgtgatttttgatcgaattcacaaca 40  Q
    ||||||||||||||||||| ||||||||||||||||||||    
T  10757575 caagttgttattggtgtga-ttttgatcgaattcacaaca 10757613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 40
Target Start/End: Complemental strand, 15354453 - 15354414
Alignment:
Q  1 caagttgttattggtgtgatttttgatcgaattcacaaca 40  Q
    ||||||||||||||||||||||||  ||||||||||||||    
T  15354453 caagttgttattggtgtgatttttcgtcgaattcacaaca 15354414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 40
Target Start/End: Complemental strand, 15356729 - 15356690
Alignment:
Q  1 caagttgttattggtgtgatttttgatcgaattcacaaca 40  Q
    ||||||||||||||||||||||||  ||||||||||||||    
T  15356729 caagttgttattggtgtgatttttcgtcgaattcacaaca 15356690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 40
Target Start/End: Original strand, 23665445 - 23665484
Alignment:
Q  1 caagttgttattggtgtgatttttgatcgaattcacaaca 40  Q
    ||||||||||||||||||||||||  ||||||||||||||    
T  23665445 caagttgttattggtgtgatttttcgtcgaattcacaaca 23665484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 40
Target Start/End: Complemental strand, 23741736 - 23741697
Alignment:
Q  1 caagttgttattggtgtgatttttgatcgaattcacaaca 40  Q
    ||||||||||||||||||||||||  ||||||||||||||    
T  23741736 caagttgttattggtgtgatttttcgtcgaattcacaaca 23741697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 40
Target Start/End: Complemental strand, 23793142 - 23793103
Alignment:
Q  1 caagttgttattggtgtgatttttgatcgaattcacaaca 40  Q
    ||||||||||||||||||||||||  ||||||||||||||    
T  23793142 caagttgttattggtgtgatttttcgtcgaattcacaaca 23793103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 5 - 40
Target Start/End: Original strand, 27910837 - 27910872
Alignment:
Q  5 ttgttattggtgtgatttttgatcgaattcacaaca 40  Q
    |||||||||||||||||||| |||||||||||||||    
T  27910837 ttgttattggtgtgatttttcatcgaattcacaaca 27910872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 5 - 40
Target Start/End: Complemental strand, 34530594 - 34530559
Alignment:
Q  5 ttgttattggtgtgatttttgatcgaattcacaaca 40  Q
    |||||||||||||||||||| |||||||||||||||    
T  34530594 ttgttattggtgtgatttttcatcgaattcacaaca 34530559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 40
Target Start/End: Complemental strand, 38960011 - 38959972
Alignment:
Q  1 caagttgttattggtgtgatttttgatcgaattcacaaca 40  Q
    |||||||||||||||||||||||| ||||||||| |||||    
T  38960011 caagttgttattggtgtgatttttcatcgaattcgcaaca 38959972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 5 - 40
Target Start/End: Complemental strand, 41585615 - 41585580
Alignment:
Q  5 ttgttattggtgtgatttttgatcgaattcacaaca 40  Q
    |||||||||||||||||||| |||||||||||||||    
T  41585615 ttgttattggtgtgatttttcatcgaattcacaaca 41585580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 10528977 - 10528936
Alignment:
Q  1 caagttgttattggtgtgatttt-tgatcgaattcacaacat 41  Q
    ||||||||||||||||||||||| | ||||||||||||||||    
T  10528977 caagttgttattggtgtgattttctcatcgaattcacaacat 10528936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 40
Target Start/End: Original strand, 15552645 - 15552685
Alignment:
Q  1 caagttgttattggtgtga-tttttgatcgaattcacaaca 40  Q
    ||||||||||||||||||| ||||| |||||||||||||||    
T  15552645 caagttgttattggtgtgattttttcatcgaattcacaaca 15552685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 37; Significance: 0.000000000006; HSPs: 17)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 1 - 41
Target Start/End: Original strand, 38210750 - 38210790
Alignment:
Q  1 caagttgttattggtgtgatttttgatcgaattcacaacat 41  Q
    |||||||||||||||||||||||| ||||||||||||||||    
T  38210750 caagttgttattggtgtgatttttcatcgaattcacaacat 38210790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 40
Target Start/End: Original strand, 747138 - 747177
Alignment:
Q  1 caagttgttattggtgtgatttttgatcgaattcacaaca 40  Q
    |||||||||||||||||||||||| |||||||||||||||    
T  747138 caagttgttattggtgtgatttttcatcgaattcacaaca 747177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 40
Target Start/End: Complemental strand, 10621405 - 10621366
Alignment:
Q  1 caagttgttattggtgtgatttttgatcgaattcacaaca 40  Q
    |||||||||||||||||||||||| |||||||||||||||    
T  10621405 caagttgttattggtgtgatttttcatcgaattcacaaca 10621366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 40
Target Start/End: Original strand, 50494378 - 50494417
Alignment:
Q  1 caagttgttattggtgtgatttttgatcgaattcacaaca 40  Q
    |||||||||||||||||||||||| |||||||||||||||    
T  50494378 caagttgttattggtgtgatttttcatcgaattcacaaca 50494417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 40
Target Start/End: Complemental strand, 6065672 - 6065633
Alignment:
Q  1 caagttgttattggtgtgatttttgatcgaattcacaaca 40  Q
    |||||||||||||||||||||||| ||||||||| |||||    
T  6065672 caagttgttattggtgtgatttttcatcgaattcgcaaca 6065633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 40
Target Start/End: Complemental strand, 9604486 - 9604447
Alignment:
Q  1 caagttgttattggtgtgatttttgatcgaattcacaaca 40  Q
    |||||||||||||||||||||||| ||||||||| |||||    
T  9604486 caagttgttattggtgtgatttttcatcgaattcgcaaca 9604447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 40
Target Start/End: Original strand, 25533803 - 25533842
Alignment:
Q  1 caagttgttattggtgtgatttttgatcgaattcacaaca 40  Q
    |||||||||||||||||||||||| ||||||||| |||||    
T  25533803 caagttgttattggtgtgatttttcatcgaattcgcaaca 25533842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 5 - 40
Target Start/End: Original strand, 28181382 - 28181417
Alignment:
Q  5 ttgttattggtgtgatttttgatcgaattcacaaca 40  Q
    ||||||||||||||||||||| ||||||||||||||    
T  28181382 ttgttattggtgtgatttttgttcgaattcacaaca 28181417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 40
Target Start/End: Complemental strand, 28412909 - 28412870
Alignment:
Q  1 caagttgttattggtgtgatttttgatcgaattcacaaca 40  Q
    |||||||||||||||||| ||||| |||||||||||||||    
T  28412909 caagttgttattggtgtgttttttcatcgaattcacaaca 28412870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 40
Target Start/End: Complemental strand, 53893932 - 53893893
Alignment:
Q  1 caagttgttattggtgtgatttttgatcgaattcacaaca 40  Q
    ||||||||||||||||||||||| ||||||||| ||||||    
T  53893932 caagttgttattggtgtgattttcgatcgaatttacaaca 53893893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 10955905 - 10955865
Alignment:
Q  1 caagttgttattggtgtgatttttgatcgaattcacaacatt 42  Q
    ||||||||||||||||||| |||| |||||||||||||||||    
T  10955905 caagttgttattggtgtga-ttttcatcgaattcacaacatt 10955865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 40
Target Start/End: Original strand, 3859890 - 3859930
Alignment:
Q  1 caagttgttattggtgtga-tttttgatcgaattcacaaca 40  Q
    ||||||||||||||||||| |||| ||||||||||||||||    
T  3859890 caagttgttattggtgtgacttttcgatcgaattcacaaca 3859930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 8 - 40
Target Start/End: Original strand, 17795637 - 17795669
Alignment:
Q  8 ttattggtgtgatttttgatcgaattcacaaca 40  Q
    ||||||||||||||||| |||||||||||||||    
T  17795637 ttattggtgtgatttttcatcgaattcacaaca 17795669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 8 - 40
Target Start/End: Original strand, 19104077 - 19104109
Alignment:
Q  8 ttattggtgtgatttttgatcgaattcacaaca 40  Q
    ||||||||||||||||| |||||||||||||||    
T  19104077 ttattggtgtgatttttcatcgaattcacaaca 19104109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 8 - 40
Target Start/End: Original strand, 23633830 - 23633862
Alignment:
Q  8 ttattggtgtgatttttgatcgaattcacaaca 40  Q
    ||||||||||||||||| |||||||||||||||    
T  23633830 ttattggtgtgatttttcatcgaattcacaaca 23633862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 8 - 40
Target Start/End: Complemental strand, 28761319 - 28761287
Alignment:
Q  8 ttattggtgtgatttttgatcgaattcacaaca 40  Q
    ||||||||||||||||| |||||||||||||||    
T  28761319 ttattggtgtgatttttcatcgaattcacaaca 28761287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 8 - 40
Target Start/End: Original strand, 31151722 - 31151754
Alignment:
Q  8 ttattggtgtgatttttgatcgaattcacaaca 40  Q
    ||||||||||||||||| |||||||||||||||    
T  31151722 ttattggtgtgatttttcatcgaattcacaaca 31151754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0472 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0472
Description:

Target: scaffold0472; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 40
Target Start/End: Original strand, 6607 - 6646
Alignment:
Q  1 caagttgttattggtgtgatttttgatcgaattcacaaca 40  Q
    |||||||||||||||||||||||| |||||||||||||||    
T  6607 caagttgttattggtgtgatttttcatcgaattcacaaca 6646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 36; Significance: 0.00000000002; HSPs: 12)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 40
Target Start/End: Complemental strand, 24873078 - 24873039
Alignment:
Q  1 caagttgttattggtgtgatttttgatcgaattcacaaca 40  Q
    |||||||||||||||||||||||| |||||||||||||||    
T  24873078 caagttgttattggtgtgatttttcatcgaattcacaaca 24873039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 5 - 40
Target Start/End: Complemental strand, 33541290 - 33541255
Alignment:
Q  5 ttgttattggtgtgatttttgatcgaattcacaaca 40  Q
    ||||||||||||||||||||||||||||||||||||    
T  33541290 ttgttattggtgtgatttttgatcgaattcacaaca 33541255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 40
Target Start/End: Original strand, 3874448 - 3874487
Alignment:
Q  1 caagttgttattggtgtgatttttgatcgaattcacaaca 40  Q
    |||||||||||||||||||||||| | |||||||||||||    
T  3874448 caagttgttattggtgtgatttttcaacgaattcacaaca 3874487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 5 - 40
Target Start/End: Original strand, 14477705 - 14477740
Alignment:
Q  5 ttgttattggtgtgatttttgatcgaattcacaaca 40  Q
    |||||||||||||||||||| |||||||||||||||    
T  14477705 ttgttattggtgtgatttttcatcgaattcacaaca 14477740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 40
Target Start/End: Original strand, 18811163 - 18811202
Alignment:
Q  1 caagttgttattggtgtgatttttgatcgaattcacaaca 40  Q
    |||||||||||||||||||||||| ||||||||| |||||    
T  18811163 caagttgttattggtgtgatttttcatcgaattcgcaaca 18811202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 40
Target Start/End: Original strand, 18813337 - 18813376
Alignment:
Q  1 caagttgttattggtgtgatttttgatcgaattcacaaca 40  Q
    |||||||||||||||||||||||| ||||||||| |||||    
T  18813337 caagttgttattggtgtgatttttcatcgaattcgcaaca 18813376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 40
Target Start/End: Complemental strand, 28283101 - 28283062
Alignment:
Q  1 caagttgttattggtgtgatttttgatcgaattcacaaca 40  Q
    |||||||||||||||||||||||| ||||||||| |||||    
T  28283101 caagttgttattggtgtgatttttcatcgaattcgcaaca 28283062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 40
Target Start/End: Original strand, 43080057 - 43080096
Alignment:
Q  1 caagttgttattggtgtgatttttgatcgaattcacaaca 40  Q
    ||||||||||||||||||||||||||||  ||||||||||    
T  43080057 caagttgttattggtgtgatttttgatcagattcacaaca 43080096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 40
Target Start/End: Original strand, 43082428 - 43082467
Alignment:
Q  1 caagttgttattggtgtgatttttgatcgaattcacaaca 40  Q
    ||||||||||||||||||||||||||||  ||||||||||    
T  43082428 caagttgttattggtgtgatttttgatcagattcacaaca 43082467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 8 - 41
Target Start/End: Original strand, 21482766 - 21482799
Alignment:
Q  8 ttattggtgtgatttttgatcgaattcacaacat 41  Q
    ||||||||||||||||| ||||||||||||||||    
T  21482766 ttattggtgtgatttttcatcgaattcacaacat 21482799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 28251450 - 28251409
Alignment:
Q  1 caagttgttattggtgtgat-ttttgatcgaattcacaacat 41  Q
    |||||||||||||||||||| |||| ||||||||||||||||    
T  28251450 caagttgttattggtgtgattttttcatcgaattcacaacat 28251409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 5 - 41
Target Start/End: Original strand, 15073167 - 15073203
Alignment:
Q  5 ttgttattggtgtgatttttgatcgaattcacaacat 41  Q
    |||||||||||||||||||| ||||||||| ||||||    
T  15073167 ttgttattggtgtgatttttcatcgaattcgcaacat 15073203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 36; Significance: 0.00000000002; HSPs: 22)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 40
Target Start/End: Original strand, 1606788 - 1606827
Alignment:
Q  1 caagttgttattggtgtgatttttgatcgaattcacaaca 40  Q
    |||||||||||||||||||||||| |||||||||||||||    
T  1606788 caagttgttattggtgtgatttttcatcgaattcacaaca 1606827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 40
Target Start/End: Original strand, 20297771 - 20297810
Alignment:
Q  1 caagttgttattggtgtgatttttgatcgaattcacaaca 40  Q
    |||||||||||||||||||||||| |||||||||||||||    
T  20297771 caagttgttattggtgtgatttttcatcgaattcacaaca 20297810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 40
Target Start/End: Original strand, 25542937 - 25542976
Alignment:
Q  1 caagttgttattggtgtgatttttgatcgaattcacaaca 40  Q
    |||||||||||||||||||||||| |||||||||||||||    
T  25542937 caagttgttattggtgtgatttttcatcgaattcacaaca 25542976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 40
Target Start/End: Original strand, 28485974 - 28486013
Alignment:
Q  1 caagttgttattggtgtgatttttgatcgaattcacaaca 40  Q
    |||||||||||||||||||||||| |||||||||||||||    
T  28485974 caagttgttattggtgtgatttttcatcgaattcacaaca 28486013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 40
Target Start/End: Original strand, 38394395 - 38394434
Alignment:
Q  1 caagttgttattggtgtgatttttgatcgaattcacaaca 40  Q
    |||||||||||||||||||||||| |||||||||||||||    
T  38394395 caagttgttattggtgtgatttttcatcgaattcacaaca 38394434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 9027073 - 9027033
Alignment:
Q  1 caagttgttattggtgtgatttttgatcgaattcacaacat 41  Q
    |||||||||||||||||||||||| ||||||||| ||||||    
T  9027073 caagttgttattggtgtgatttttcatcgaattcgcaacat 9027033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 40
Target Start/End: Original strand, 11759536 - 11759575
Alignment:
Q  1 caagttgttattggtgtgatttttgatcgaattcacaaca 40  Q
    |||||||||||||||||||||||| ||||||||| |||||    
T  11759536 caagttgttattggtgtgatttttcatcgaattcgcaaca 11759575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 5 - 40
Target Start/End: Complemental strand, 13099352 - 13099317
Alignment:
Q  5 ttgttattggtgtgatttttgatcgaattcacaaca 40  Q
    |||||||||||||||||||| |||||||||||||||    
T  13099352 ttgttattggtgtgatttttcatcgaattcacaaca 13099317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 40
Target Start/End: Original strand, 20299869 - 20299908
Alignment:
Q  1 caagttgttattggtgtgatttttgatcgaattcacaaca 40  Q
    |||||||||||||||||||||||| ||| |||||||||||    
T  20299869 caagttgttattggtgtgatttttcatcaaattcacaaca 20299908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 40
Target Start/End: Original strand, 22137488 - 22137527
Alignment:
Q  1 caagttgttattggtgtgatttttgatcgaattcacaaca 40  Q
    ||||||||||||||||||||||||  ||||||||||||||    
T  22137488 caagttgttattggtgtgatttttcgtcgaattcacaaca 22137527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 40
Target Start/End: Original strand, 25276527 - 25276566
Alignment:
Q  1 caagttgttattggtgtgatttttgatcgaattcacaaca 40  Q
    |||||||||||||||||||||||| | |||||||||||||    
T  25276527 caagttgttattggtgtgattttttagcgaattcacaaca 25276566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 40
Target Start/End: Complemental strand, 31153730 - 31153691
Alignment:
Q  1 caagttgttattggtgtgatttttgatcgaattcacaaca 40  Q
    |||||||||||||||||||||||| ||||||||| |||||    
T  31153730 caagttgttattggtgtgatttttcatcgaattcgcaaca 31153691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 40
Target Start/End: Original strand, 40550238 - 40550277
Alignment:
Q  1 caagttgttattggtgtgatttttgatcgaattcacaaca 40  Q
    ||||||||||||||||||||||||  ||||||||||||||    
T  40550238 caagttgttattggtgtgatttttcgtcgaattcacaaca 40550277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 40
Target Start/End: Original strand, 40552515 - 40552554
Alignment:
Q  1 caagttgttattggtgtgatttttgatcgaattcacaaca 40  Q
    ||||||||||||||||||||||||  ||||||||||||||    
T  40552515 caagttgttattggtgtgatttttcgtcgaattcacaaca 40552554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 39
Target Start/End: Original strand, 28487962 - 28488000
Alignment:
Q  1 caagttgttattggtgtgatttttgatcgaattcacaac 39  Q
    |||||||||||||||||||||||| ||||||||| ||||    
T  28487962 caagttgttattggtgtgatttttcatcgaattcgcaac 28488000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 40
Target Start/End: Complemental strand, 7349157 - 7349117
Alignment:
Q  1 caagttgttattggtgtgat-ttttgatcgaattcacaaca 40  Q
    |||||||||||||||||||| |||| |||||||||||||||    
T  7349157 caagttgttattggtgtgattttttcatcgaattcacaaca 7349117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 40
Target Start/End: Complemental strand, 7351531 - 7351491
Alignment:
Q  1 caagttgttattggtgtgat-ttttgatcgaattcacaaca 40  Q
    |||||||||||||||||||| |||| |||||||||||||||    
T  7351531 caagttgttattggtgtgattttttcatcgaattcacaaca 7351491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 4 - 40
Target Start/End: Original strand, 20626445 - 20626481
Alignment:
Q  4 gttgttattggtgtgatttttgatcgaattcacaaca 40  Q
    ||||||||||||||||||||| ||||||||| |||||    
T  20626445 gttgttattggtgtgatttttcatcgaattcgcaaca 20626481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 4 - 40
Target Start/End: Original strand, 20630336 - 20630372
Alignment:
Q  4 gttgttattggtgtgatttttgatcgaattcacaaca 40  Q
    ||||||||||||||||||||| ||||||||| |||||    
T  20630336 gttgttattggtgtgatttttcatcgaattcgcaaca 20630372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 4 - 40
Target Start/End: Original strand, 20642755 - 20642791
Alignment:
Q  4 gttgttattggtgtgatttttgatcgaattcacaaca 40  Q
    ||||||||||||||||||||| ||||||||| |||||    
T  20642755 gttgttattggtgtgatttttcatcgaattcgcaaca 20642791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 8 - 40
Target Start/End: Original strand, 24465943 - 24465975
Alignment:
Q  8 ttattggtgtgatttttgatcgaattcacaaca 40  Q
    ||||||||||||||||| |||||||||||||||    
T  24465943 ttattggtgtgatttttcatcgaattcacaaca 24465975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 40
Target Start/End: Complemental strand, 40836623 - 40836583
Alignment:
Q  1 caagttgttattggtgtgattttt-gatcgaattcacaaca 40  Q
    |||||||||||||||||||||||| |||||||||| |||||    
T  40836623 caagttgttattggtgtgatttttcgatcgaattcgcaaca 40836583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 36; Significance: 0.00000000002; HSPs: 15)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 40
Target Start/End: Complemental strand, 8717234 - 8717195
Alignment:
Q  1 caagttgttattggtgtgatttttgatcgaattcacaaca 40  Q
    |||||||||||||||||||||||| |||||||||||||||    
T  8717234 caagttgttattggtgtgatttttcatcgaattcacaaca 8717195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 40
Target Start/End: Complemental strand, 11982911 - 11982872
Alignment:
Q  1 caagttgttattggtgtgatttttgatcgaattcacaaca 40  Q
    |||||||||||||||||||||||| |||||||||||||||    
T  11982911 caagttgttattggtgtgatttttcatcgaattcacaaca 11982872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 40
Target Start/End: Complemental strand, 12195393 - 12195354
Alignment:
Q  1 caagttgttattggtgtgatttttgatcgaattcacaaca 40  Q
    |||||||||||||||||||||||| |||||||||||||||    
T  12195393 caagttgttattggtgtgatttttcatcgaattcacaaca 12195354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 40
Target Start/End: Complemental strand, 26066000 - 26065961
Alignment:
Q  1 caagttgttattggtgtgatttttgatcgaattcacaaca 40  Q
    |||||||||||||||||||||||| |||||||||||||||    
T  26066000 caagttgttattggtgtgatttttcatcgaattcacaaca 26065961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 40
Target Start/End: Complemental strand, 26068274 - 26068235
Alignment:
Q  1 caagttgttattggtgtgatttttgatcgaattcacaaca 40  Q
    |||||||||||||||||||||||| |||||||||||||||    
T  26068274 caagttgttattggtgtgatttttcatcgaattcacaaca 26068235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 40
Target Start/End: Complemental strand, 29754588 - 29754549
Alignment:
Q  1 caagttgttattggtgtgatttttgatcgaattcacaaca 40  Q
    |||||||||||||||||||||||| |||||||||||||||    
T  29754588 caagttgttattggtgtgatttttcatcgaattcacaaca 29754549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 40
Target Start/End: Complemental strand, 4816110 - 4816071
Alignment:
Q  1 caagttgttattggtgtgatttttgatcgaattcacaaca 40  Q
    ||||||||||||||||||||||||||||  ||||||||||    
T  4816110 caagttgttattggtgtgatttttgatcagattcacaaca 4816071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 5 - 40
Target Start/End: Original strand, 15367463 - 15367498
Alignment:
Q  5 ttgttattggtgtgatttttgatcgaattcacaaca 40  Q
    |||||||||||||||||||| |||||||||||||||    
T  15367463 ttgttattggtgtgatttttcatcgaattcacaaca 15367498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 40
Target Start/End: Complemental strand, 26932442 - 26932403
Alignment:
Q  1 caagttgttattggtgtgatttttgatcgaattcacaaca 40  Q
    |||||||||||||||||||||||| ||| |||||||||||    
T  26932442 caagttgttattggtgtgatttttcatcaaattcacaaca 26932403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 5 - 43
Target Start/End: Original strand, 13057624 - 13057662
Alignment:
Q  5 ttgttattggtgtgatttttgatcgaattcacaacattg 43  Q
    |||||||||||||||||||| ||||||||| ||||||||    
T  13057624 ttgttattggtgtgatttttcatcgaattcgcaacattg 13057662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 5 - 42
Target Start/End: Original strand, 9020363 - 9020400
Alignment:
Q  5 ttgttattggtgtgatttttgatcgaattcacaacatt 42  Q
    |||||||||||||||||||| ||||||||| |||||||    
T  9020363 ttgttattggtgtgatttttcatcgaattcgcaacatt 9020400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 5 - 38
Target Start/End: Original strand, 22491044 - 22491077
Alignment:
Q  5 ttgttattggtgtgatttttgatcgaattcacaa 38  Q
    |||||||||||||||||||| |||||||||||||    
T  22491044 ttgttattggtgtgatttttcatcgaattcacaa 22491077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 40
Target Start/End: Complemental strand, 5273095 - 5273055
Alignment:
Q  1 caagttgttattggtgtgat-ttttgatcgaattcacaaca 40  Q
    |||||||||||||||||||| |||| |||||||||||||||    
T  5273095 caagttgttattggtgtgattttttcatcgaattcacaaca 5273055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 40
Target Start/End: Complemental strand, 19704443 - 19704403
Alignment:
Q  1 caagttgttattggtgtgattt-ttgatcgaattcacaaca 40  Q
    |||||||||||||||||||||| | ||||||||||||||||    
T  19704443 caagttgttattggtgtgatttctcgatcgaattcacaaca 19704403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 8 - 40
Target Start/End: Original strand, 25480314 - 25480346
Alignment:
Q  8 ttattggtgtgatttttgatcgaattcacaaca 40  Q
    ||||||||||||||||| |||||||||||||||    
T  25480314 ttattggtgtgatttttcatcgaattcacaaca 25480346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 36; Significance: 0.00000000002; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 40
Target Start/End: Complemental strand, 36561020 - 36560981
Alignment:
Q  1 caagttgttattggtgtgatttttgatcgaattcacaaca 40  Q
    |||||||||||||||||||||||| |||||||||||||||    
T  36561020 caagttgttattggtgtgatttttcatcgaattcacaaca 36560981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 40
Target Start/End: Complemental strand, 45332059 - 45332020
Alignment:
Q  1 caagttgttattggtgtgatttttgatcgaattcacaaca 40  Q
    |||||||||||||||||||||||| |||||||||||||||    
T  45332059 caagttgttattggtgtgatttttcatcgaattcacaaca 45332020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 35215472 - 35215432
Alignment:
Q  1 caagttgttattggtgtgatttttgatcgaattcacaacat 41  Q
    ||||||||||||||||||||||||||||  |||||||||||    
T  35215472 caagttgttattggtgtgatttttgatcagattcacaacat 35215432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 5 - 40
Target Start/End: Complemental strand, 11739456 - 11739421
Alignment:
Q  5 ttgttattggtgtgatttttgatcgaattcacaaca 40  Q
    |||||||||||||||||||| |||||||||||||||    
T  11739456 ttgttattggtgtgatttttcatcgaattcacaaca 11739421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 40
Target Start/End: Complemental strand, 35217849 - 35217810
Alignment:
Q  1 caagttgttattggtgtgatttttgatcgaattcacaaca 40  Q
    ||||||||||||||||||||||||||||  ||||||||||    
T  35217849 caagttgttattggtgtgatttttgatcagattcacaaca 35217810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 40
Target Start/End: Complemental strand, 36558760 - 36558721
Alignment:
Q  1 caagttgttattggtgtgatttttgatcgaattcacaaca 40  Q
    |||||| ||||||||||||||||| |||||||||||||||    
T  36558760 caagttattattggtgtgatttttcatcgaattcacaaca 36558721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 8 - 41
Target Start/End: Original strand, 22874487 - 22874520
Alignment:
Q  8 ttattggtgtgatttttgatcgaattcacaacat 41  Q
    ||||||||||||||||| ||||||||||||||||    
T  22874487 ttattggtgtgatttttcatcgaattcacaacat 22874520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1674 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: scaffold1674
Description:

Target: scaffold1674; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 1331 - 1294
Alignment:
Q  1 caagttgttattggtgtgatttttgatcgaattcacaa 38  Q
    |||||||||||||||||||||||| |||||||||||||    
T  1331 caagttgttattggtgtgatttttcatcgaattcacaa 1294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0078 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0078
Description:

Target: scaffold0078; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 8 - 40
Target Start/End: Complemental strand, 23372 - 23340
Alignment:
Q  8 ttattggtgtgatttttgatcgaattcacaaca 40  Q
    |||||||||||||||||||||||||||||||||    
T  23372 ttattggtgtgatttttgatcgaattcacaaca 23340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0140 (Bit Score: 32; Significance: 0.000000006; HSPs: 2)
Name: scaffold0140
Description:

Target: scaffold0140; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 40
Target Start/End: Original strand, 22525 - 22564
Alignment:
Q  1 caagttgttattggtgtgatttttgatcgaattcacaaca 40  Q
    ||||||||||||||||||||||||  ||||||||||||||    
T  22525 caagttgttattggtgtgatttttcgtcgaattcacaaca 22564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0140; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 40
Target Start/End: Original strand, 24800 - 24839
Alignment:
Q  1 caagttgttattggtgtgatttttgatcgaattcacaaca 40  Q
    ||||||||||||||||||||||||  ||||||||||||||    
T  24800 caagttgttattggtgtgatttttcgtcgaattcacaaca 24839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0127 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: scaffold0127
Description:

Target: scaffold0127; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 40
Target Start/End: Complemental strand, 12754 - 12715
Alignment:
Q  1 caagttgttattggtgtgatttttgatcgaattcacaaca 40  Q
    ||||||||||||||||| |||||| |||||||||||||||    
T  12754 caagttgttattggtgtcatttttcatcgaattcacaaca 12715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0131 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0131
Description:

Target: scaffold0131; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 5 - 37
Target Start/End: Original strand, 15404 - 15436
Alignment:
Q  5 ttgttattggtgtgatttttgatcgaattcaca 37  Q
    |||||||||||||||||||| ||||||||||||    
T  15404 ttgttattggtgtgatttttcatcgaattcaca 15436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University