View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17406_low_12 (Length: 244)
Name: NF17406_low_12
Description: NF17406
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17406_low_12 |
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Alignment Details
Target: chr2 (Bit Score: 174; Significance: 1e-93; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 174; E-Value: 1e-93
Query Start/End: Original strand, 16 - 242
Target Start/End: Complemental strand, 8329077 - 8328852
Alignment:
| Q |
16 |
ctattttcacccataatttcaagtcatgatgggttaaaattaactctcgagttatccgactcattcttaatatacnnnnnnnctaaaaatagcagatact |
115 |
Q |
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| T |
8329077 |
ctattttcacccataatttcaagtcatgataggctaaaattaactctcgagttatccgactcatccttaatatacttttttta-aaaaatagcagatact |
8328979 |
T |
|
| Q |
116 |
ttgaaacggtcctgtaaaagataaaaagttgtttgcgcaagaaaaagtcttatgagacattttatagtacttgtcatgtatttgaaaaaatggttttcct |
215 |
Q |
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|||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8328978 |
ttgaaacggtccggtaaaaaataaaaagttgtttgcgcaagaaaaagtcttatgagacattttatagtacttgtcatgtatttgaaaaaatggttttcct |
8328879 |
T |
|
| Q |
216 |
cagtactaatccaccagtaaattaggc |
242 |
Q |
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||||||||||||||||||||||||||| |
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| T |
8328878 |
cagtactaatccaccagtaaattaggc |
8328852 |
T |
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