View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17406_low_2 (Length: 483)
Name: NF17406_low_2
Description: NF17406
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17406_low_2 |
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Alignment Details
Target: chr6 (Bit Score: 265; Significance: 1e-147; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 265; E-Value: 1e-147
Query Start/End: Original strand, 1 - 383
Target Start/End: Complemental strand, 31206455 - 31206073
Alignment:
| Q |
1 |
gggctgccttttgtggtatatggctaagcaaatatgcttgtggcaagtgcttaaatgtaagtataataatgtttgcaatttggttcttattttctttatg |
100 |
Q |
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| T |
31206455 |
gggctgccttttgtggtatatggctaagcaaatatgcttgtggcaagtgcttaaatgtaagtataataatgtttgcaatttggttcttattttctttatg |
31206356 |
T |
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| Q |
101 |
ccatacaacccttgttggaatctcacacatcacgggttcaaatatccacatcctaaaacaatttgagaaaattctctcgaaaacaacttcttttcctcca |
200 |
Q |
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| T |
31206355 |
ccatacaacccttgttggaatctcacacatcccgggttcaaatatccacatcctaaaacaatttgagaaaattctctcgaaaacaactttttttcctcca |
31206256 |
T |
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| Q |
201 |
tcaagaggtggaatcgaatctctgagacttataacacatttaattagaatgcaaagacaactaatatttgtttatattttacagatttttgggtgaattt |
300 |
Q |
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| T |
31206255 |
tcgagaggtggaatcgaatctcagggacttgtaacacat----ttagaatgcaaaaacaactaatatttgattatatttt-ctgatttttgggtaaactt |
31206161 |
T |
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| Q |
301 |
taggagcaatc------caaaataacaactaatatttgaaatttaggggtttaaattcaagccctaaaatgtctctataggctacaacc |
383 |
Q |
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| T |
31206160 |
taggagcaatcaaaaaaaaaaaaaaaaactaatatttgaacttta-gggtttacattcacgccctaaaatgtctctataggctacaacc |
31206073 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 292 - 339
Target Start/End: Complemental strand, 31196191 - 31196144
Alignment:
| Q |
292 |
ggtgaattttaggagcaatccaaaataacaactaatatttgaaattta |
339 |
Q |
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| T |
31196191 |
ggtgaactttaggagcaatccaaaaaaacaactaatatttgaacttta |
31196144 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 292 - 339
Target Start/End: Complemental strand, 31174782 - 31174735
Alignment:
| Q |
292 |
ggtgaattttaggagcaatccaaaataacaactaatatttgaaattta |
339 |
Q |
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|||||| |||||||||||||||| | ||||||||||||||||| |||| |
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| T |
31174782 |
ggtgaactttaggagcaatccaagaaaacaactaatatttgaacttta |
31174735 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 28 - 65
Target Start/End: Complemental strand, 31175085 - 31175048
Alignment:
| Q |
28 |
gcaaatatgcttgtggcaagtgcttaaatgtaagtata |
65 |
Q |
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|||||| ||||||||||||||||||||||||| ||||| |
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| T |
31175085 |
gcaaatctgcttgtggcaagtgcttaaatgtatgtata |
31175048 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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