View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17406_low_3 (Length: 439)
Name: NF17406_low_3
Description: NF17406
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17406_low_3 |
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Alignment Details
Target: chr3 (Bit Score: 324; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 324; E-Value: 0
Query Start/End: Original strand, 1 - 328
Target Start/End: Original strand, 24992608 - 24992935
Alignment:
| Q |
1 |
catatattcactctaacaaaaatcactttgtttacaataagtgttctatgaaaagacttgaaatcattttaaaagcacaaggcacagtttaaatgttttt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24992608 |
catatattcactctaacaaaaatcactttgtttacaataagtgttctatgaaaagacttgaaatcattttaaaagcacaaggcacagtttaaatgttttt |
24992707 |
T |
|
| Q |
101 |
acagattatttgtcaaggaatttttcttcaaataagactatttgttttataagaaggcattgaagataagccacaaagaactgactaattttattttgat |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24992708 |
acagattatttgtcaaggaatttttcttcaaataagactatttgttttataagaaggcattgaagataagccacaaagaactgactaattttattttgat |
24992807 |
T |
|
| Q |
201 |
atgtggtccgatcattcagaggacaggaggacgcttgtgcactgttttcattaacgtgcctatttttggttggtctattttctattatcttcttttcaat |
300 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24992808 |
atgtggtccgatcattcagaggacaggaggacgcttgtgcactgttttcattaacgtgcctatttttggttggtctattttctattatcttcttttcaat |
24992907 |
T |
|
| Q |
301 |
atcatgagctcaagacttggaatagaag |
328 |
Q |
| |
|
||||||||||||||||||||| |||||| |
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| T |
24992908 |
atcatgagctcaagacttggagtagaag |
24992935 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 135; E-Value: 3e-70
Query Start/End: Original strand, 1 - 248
Target Start/End: Original strand, 25015131 - 25015379
Alignment:
| Q |
1 |
catatattcactctaacaaaaatcactttgtttacaataagtgttct--atgaaaagacttgaaatcattttaaaagcacaaggcacagtttaaatgttt |
98 |
Q |
| |
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||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||| ||| || ||||||||||| |||||||| |
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| T |
25015131 |
catatattcactctaacaaaa-tcactttgtttacaataagtgttctctatgaaaagacttgaaatcatttaaaatgctaaaggcacagttaaaatgttt |
25015229 |
T |
|
| Q |
99 |
ttacagattatttgtcaaggaatttttcttcaaataagactatttgttttataagaaggcattgaagataagccacaaagaactgactaattttattttg |
198 |
Q |
| |
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||||| || |||||||| ||||||||||||||||||| | | ||||||||||| |||||||||||||||||||||||| |||||||||||||||| | |
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| T |
25015230 |
ttacaagttctttgtcaaagaatttttcttcaaataaggcagtgtgttttataagcaggcattgaagataagccacaaagcactgactaattttattcta |
25015329 |
T |
|
| Q |
199 |
atatgtggtccgatcattcagaggacaggaggacgcttgtgcactgtttt |
248 |
Q |
| |
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| ||||||||||||||| |||| | | |||||| |||||||| ||||||| |
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| T |
25015330 |
aaatgtggtccgatcatacagatggctggaggaggcttgtgcgctgtttt |
25015379 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 55; Significance: 2e-22; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 1 - 164
Target Start/End: Complemental strand, 33531868 - 33531714
Alignment:
| Q |
1 |
catatattcactctaacaaaaatcactttgtttacaataagtgttctatgaaaagacttgaaatcattttaaaagcacaaggcacagtttaaatgttttt |
100 |
Q |
| |
|
|||||||||||||||||||| |||||| ||||| |||||| |||||||||||||||||||||||| || |||| ||||| |||||||||| |
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| T |
33531868 |
catatattcactctaacaaagatcact--------aataaaagttctaagaaaagacttgaaatcattttaaa-gctaaaggttcagttaaaatgttttt |
33531778 |
T |
|
| Q |
101 |
acagattatttgtcaaggaatttttcttcaaataagactatttgttttataagaaggcattgaa |
164 |
Q |
| |
|
||| || |||||||| |||||||||||||| |||||| | || ||||||||||||||||||| |
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|
| T |
33531777 |
acaagttctttgtcaaagaatttttcttcaactaagacaaagtgctttataagaaggcattgaa |
33531714 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 55; Significance: 2e-22; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 1 - 164
Target Start/End: Original strand, 16869479 - 16869633
Alignment:
| Q |
1 |
catatattcactctaacaaaaatcactttgtttacaataagtgttctatgaaaagacttgaaatcattttaaaagcacaaggcacagtttaaatgttttt |
100 |
Q |
| |
|
|||||||||||||||||||| |||||| ||||| |||||| |||||||||||||||||||||||| || |||| ||||| |||||||||| |
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| T |
16869479 |
catatattcactctaacaaagatcact--------aataaaagttctaagaaaagacttgaaatcattttaaa-gctaaaggttcagttaaaatgttttt |
16869569 |
T |
|
| Q |
101 |
acagattatttgtcaaggaatttttcttcaaataagactatttgttttataagaaggcattgaa |
164 |
Q |
| |
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||| || |||||||| |||||||||||||| |||||| | || ||||||||||||||||||| |
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|
| T |
16869570 |
acaagttctttgtcaaagaatttttcttcaactaagacaaagtgctttataagaaggcattgaa |
16869633 |
T |
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