View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17406_low_4 (Length: 367)
Name: NF17406_low_4
Description: NF17406
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17406_low_4 |
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Alignment Details
Target: chr8 (Bit Score: 337; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 337; E-Value: 0
Query Start/End: Original strand, 8 - 352
Target Start/End: Original strand, 34174908 - 34175252
Alignment:
| Q |
8 |
tgagatgaaataatgagtgaacaatgggaggaacatagttgggtcgaaggatgtgagcaatggttgtgttttctgctatggcatggacaaacaaagcacc |
107 |
Q |
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| T |
34174908 |
tgagatgaaataatgagtgaacaatgggaggaacatagttgggtcgaaggatgtgagcaatggttgtgttttctgctatggcatggacaaacaacgcacc |
34175007 |
T |
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| Q |
108 |
agcattgttgcaaatgatggaacatgaggcattgttatgttcatcgtgttgagatattacaagacgaccaacgaggggtggaaagaaatggagagtggag |
207 |
Q |
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| T |
34175008 |
agcattgttgcaaatgatggaacatgaggcattgttatgttcatcgtgttgagatattacaagacgaccaacgaggggtggaaagaaatggagagtggag |
34175107 |
T |
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| Q |
208 |
gaaagtgtttgtttaagatgttggatttggttggttttaggtttatggaaaagaaggccttgttggattggatctattttgagtaatcctagatcccatg |
307 |
Q |
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| T |
34175108 |
gaaagtgtttgtttaagatgttggatttggttggttttaggtttatggaaaagaagcccttgttggattggatctattttgagtaatcctagatcccatg |
34175207 |
T |
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| Q |
308 |
gagttaaatggataattttgtgagttgatttgtcaccaccatgat |
352 |
Q |
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| T |
34175208 |
gagttaaatggataattttgtgagttgatttgtcaccaccatgat |
34175252 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 139; Significance: 1e-72; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 139; E-Value: 1e-72
Query Start/End: Original strand, 16 - 342
Target Start/End: Original strand, 39076037 - 39076363
Alignment:
| Q |
16 |
aataatgagtgaacaatgggaggaacatagttgggtcgaaggatgtgagcaatggttgtgttttctgctatggcatggacaaacaaagcaccagcattgt |
115 |
Q |
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| T |
39076037 |
aataatgaggaaacaatgggaggaacatactttggctgaaggatgtcggcaatggcagtgtgttcagctttggcgtgtacaaacaatgcaccagcgttgt |
39076136 |
T |
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| Q |
116 |
tgcaaatgatggaacatgaggcattgttatgttcatcgtgttgagatattacaagacgaccaacgaggggtggaaagaaatggagagtggaggaaagtgt |
215 |
Q |
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| T |
39076137 |
tgcaaatgatggaacatgaggcgttgttaggttcgtcgtgttgtgttattacaagacgaccagcgagtggtggaaagaagttgagagtggaggaaagtgt |
39076236 |
T |
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| Q |
216 |
ttgtttaagatgttggatttggttggttttaggtttatggaaaagaaggccttgttggattggatctattttgagtaatcctagatcccatggagttaaa |
315 |
Q |
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| T |
39076237 |
ttgtttaagatggtcgatttggtttgtattgggtttatggaaaagaagacctttttggattggtgccattttaagatatttgagatcccatggtgctaaa |
39076336 |
T |
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| Q |
316 |
tggataattttgtgagttgatttgtca |
342 |
Q |
| |
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| T |
39076337 |
tcgataattgtgtgagttgagttgtca |
39076363 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 28 - 342
Target Start/End: Original strand, 7399280 - 7399594
Alignment:
| Q |
28 |
acaatgggaggaacatagttgggtcgaaggatgtgagcaatggttgtgttttctgctatggcatggacaaacaaagcaccagcattgttgcaaatgatgg |
127 |
Q |
| |
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|||| |||||||||||| || ||| ||||||||| |||||||| |||||||||||| |||||||||||||||| |||||| | ||||| |||| ||||| |
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| T |
7399280 |
acaacgggaggaacatactttggttgaaggatgtcggcaatggtagtgttttctgctttggcatggacaaacaatgcaccaacgttgttacaaacgatgg |
7399379 |
T |
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| Q |
128 |
aacatgaggcattgttatgttcatcgtgttgagatattacaagacgaccaacgaggggtggaaagaaatggagagtggaggaaagtgtttgtttaagatg |
227 |
Q |
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| T |
7399380 |
aacatgaggcgttgttaggttcgtcgtgttgtgttattacaagacgacccgcgagtggtggaaaaaagttaagtgtggaggaaagtgtttttttaagatg |
7399479 |
T |
|
| Q |
228 |
ttggatttggttggttttaggtttatggaaaagaaggccttgttggattggatctattttgagtaatcctagatcccatggagttaaatggataattttg |
327 |
Q |
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| T |
7399480 |
gtcaatttggtttgttttgggtttatggaaaagaagacctctttggattggtgccaatttgagaaatttgagatcccatggagataaatggataattttg |
7399579 |
T |
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| Q |
328 |
tgagttgatttgtca |
342 |
Q |
| |
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| | |||| |||||| |
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| T |
7399580 |
tcacttgagttgtca |
7399594 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 19 - 134
Target Start/End: Original strand, 39088791 - 39088906
Alignment:
| Q |
19 |
aatgagtgaacaatgggaggaacatagttgggtcgaaggatgtgagcaatggttgtgttttctgctatggcatggacaaacaaagcaccagcattgttgc |
118 |
Q |
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||||||||||| || | |||||||||||| ||| |||||||| | | |||||||||||| ||| |||| |||| || | ||||||| ||||||| |
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| T |
39088791 |
aatgagtgaactatagaaggaacatagtttggtttaaggatgtctgatacggttgtgttttccgctttggcgtggatgaagagagcaccaatgttgttgc |
39088890 |
T |
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| Q |
119 |
aaatgatggaacatga |
134 |
Q |
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| T |
39088891 |
aaatgatggaacatga |
39088906 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 71 - 143
Target Start/End: Original strand, 39083189 - 39083261
Alignment:
| Q |
71 |
ttgtgttttctgctatggcatggacaaacaaagcaccagcattgttgcaaatgatggaacatgaggcattgtt |
143 |
Q |
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|||||||||||||| | || |||| || | ||||||| ||||||||||||||||||||||| |||||||| |
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| T |
39083189 |
ttgtgttttctgcttttgcgtggatgaagagagcaccaaggttgttgcaaatgatggaacatgatgcattgtt |
39083261 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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