View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17406_low_5 (Length: 364)
Name: NF17406_low_5
Description: NF17406
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17406_low_5 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 140; Significance: 3e-73; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 140; E-Value: 3e-73
Query Start/End: Original strand, 177 - 353
Target Start/End: Original strand, 38008827 - 38009002
Alignment:
| Q |
177 |
cataacctcctatatattcctcatttcattgcaattcattttcatagaattctctttccataannnnnnnngatatatcactgtcatagtcccaaaccca |
276 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||| |||||||||||||||||| |
|
|
| T |
38008827 |
cataacctcctatatattcctcatttcattgcaattcattttcatagaattctctttccgtaattttttt-gatatatcaccgtcatagtcccaaaccca |
38008925 |
T |
|
| Q |
277 |
taactctcaagccaattttgttttgtttttctaaaaacaaatgaaatgtcgcatggtgtaataaaccaatctttcat |
353 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38008926 |
taactctcaagccaattttgttttgtttttctaaaaacaaatgaaatgtcgcatggtgtaataaaccaatctttcat |
38009002 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 18 - 86
Target Start/End: Original strand, 38008668 - 38008736
Alignment:
| Q |
18 |
tatttgacagcttttaatatcacattaaatcagacaattatgtattttttaatttcattaaatcacctg |
86 |
Q |
| |
|
||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38008668 |
tatttgacaacttttaatatcacattaaatcggacaattatgtattttttaatttcattaaatcacctg |
38008736 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 74; Significance: 7e-34; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 177 - 353
Target Start/End: Original strand, 4233783 - 4233950
Alignment:
| Q |
177 |
cataacctcctatatattcctcatttcattgcaattcattttcatagaattctctttccataannnnnnnngatatatcactgtcatagtcccaaaccca |
276 |
Q |
| |
|
||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||| ||| ||| ||||||||| |
|
|
| T |
4233783 |
cataacctcatgtatattcctcatttcattgcaattcattttcatagaattctctttccattatttatt----tatatcaccatcacagttccaaaccca |
4233878 |
T |
|
| Q |
277 |
taactctcaagccaattttgttttgtttttctaaaaacaaatgaaatgtcgcatggtgtaataaaccaatctttcat |
353 |
Q |
| |
|
|||||||||| |||||||||||||||||||| |||||| |||||||||||||| |||||||| ||||||||| |
|
|
| T |
4233879 |
taactctcaaaccaattttgttttgtttttcgaaaaac-----aaatgtcgcatggtttaataaactcatctttcat |
4233950 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 194 - 319
Target Start/End: Original strand, 4276506 - 4276627
Alignment:
| Q |
194 |
tcctcatttcattgcaattcattttcatagaattctctttccataannnnnnnngatatatcactgtcatagtcccaaacccataactctcaagccaatt |
293 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||| ||||||||||||||||| |||||||||||| |
|
|
| T |
4276506 |
tcctcatttcattgcaattcattttcatagaattctctttccataatttatt----tatatcaccatcacagtcccaaacccataacactcaagccaatt |
4276601 |
T |
|
| Q |
294 |
ttgttttgtttttctaaaaacaaatg |
319 |
Q |
| |
|
|||||||||||||| ||||||||||| |
|
|
| T |
4276602 |
ttgttttgtttttcgaaaaacaaatg |
4276627 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 28 - 85
Target Start/End: Original strand, 4233636 - 4233693
Alignment:
| Q |
28 |
cttttaatatcacattaaatcagacaattatgtattttttaatttcattaaatcacct |
85 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
4233636 |
cttttaatatcacattaaatcagacaattatgtactttttaatttcattaaatcacct |
4233693 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 22 - 85
Target Start/End: Original strand, 5932414 - 5932478
Alignment:
| Q |
22 |
tgacagcttttaatatcacattaaatcagacaattatgtat-tttttaatttcattaaatcacct |
85 |
Q |
| |
|
||||| |||| ||||||||||||| |||||||||||| | | |||||||||||||||||||||| |
|
|
| T |
5932414 |
tgacaactttcaatatcacattaattcagacaattatatttcgttttaatttcattaaatcacct |
5932478 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University