View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17406_low_8 (Length: 312)
Name: NF17406_low_8
Description: NF17406
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17406_low_8 |
 | |
|
| [»] scaffold0608 (1 HSPs) |
| | |
|
Alignment Details
Target: chr5 (Bit Score: 164; Significance: 1e-87; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 164; E-Value: 1e-87
Query Start/End: Original strand, 54 - 293
Target Start/End: Original strand, 16809503 - 16809744
Alignment:
| Q |
54 |
ttttatgaagaagataat---ctttggacatgaatcaacaatgtgtttgaagattaaaaattaaaggacttaatattctaaaggcnnnnnnncttaaaga |
150 |
Q |
| |
|
|||||||| ||||||||| |||| ||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||| |||||||| |
|
|
| T |
16809503 |
ttttatgatgaagataattgtctttcgacatgaatcaacaatgtgtttgaagattaaaaattaaaagacttaaaattctaaaggcaaaaaaacttaaaga |
16809602 |
T |
|
| Q |
151 |
aagataaattgcattgcattgaaatgtaagtggttcatcaaatctttacctaaattctatgactcttttctctctatgatgtgtactttgaattttagaa |
250 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||| |
|
|
| T |
16809603 |
aagataaattgtattgcattgaaatgtaagtggttcatcaaatctttacctaaattctatgactcttttctctctacgatgtgtactttgagttttagaa |
16809702 |
T |
|
| Q |
251 |
ttatgtaagagtaattcgtgacccgtttttcctataaagaact |
293 |
Q |
| |
|
| ||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
16809703 |
-tctgtaagagtaattcgtgccccgtttttcctataaagaact |
16809744 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 80 - 135
Target Start/End: Complemental strand, 21170953 - 21170898
Alignment:
| Q |
80 |
atgaatcaacaatgtgtttgaagattaaaaattaaaggacttaatattctaaaggc |
135 |
Q |
| |
|
|||||||||||||||||||||||||| |||| |||| |||||| ||||||||||| |
|
|
| T |
21170953 |
atgaatcaacaatgtgtttgaagattcaaaactaaaagacttagaattctaaaggc |
21170898 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 82 - 135
Target Start/End: Complemental strand, 21166330 - 21166277
Alignment:
| Q |
82 |
gaatcaacaatgtgtttgaagattaaaaattaaaggacttaatattctaaaggc |
135 |
Q |
| |
|
|||||||||||||||||||||||| |||| |||| |||||| ||||||||||| |
|
|
| T |
21166330 |
gaatcaacaatgtgtttgaagattcaaaactaaaagacttagaattctaaaggc |
21166277 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0608 (Bit Score: 67; Significance: 9e-30; HSPs: 1)
Name: scaffold0608
Description:
Target: scaffold0608; HSP #1
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 143 - 285
Target Start/End: Original strand, 6095 - 6237
Alignment:
| Q |
143 |
cttaaagaaagataaattgcattgcattgaaatgtaagtggttcatcaaatctttacctaaattctatgactcttttctctctatgatgtgtactttgaa |
242 |
Q |
| |
|
|||||||||| | ||||||||||||||||||||||| || |||||||||||||||| || ||| ||||||| ||||||||||| | ||||||||| |
|
|
| T |
6095 |
cttaaagaaacagtaattgcattgcattgaaatgtaaatgattcatcaaatctttacatacattttatgactattttctctctacaccgggtactttgag |
6194 |
T |
|
| Q |
243 |
ttttagaattatgtaagagtaattcgtgacccgtttttcctat |
285 |
Q |
| |
|
|||||||||| ||||| ||| ||| |||||||||||||||||| |
|
|
| T |
6195 |
ttttagaattctgtaatagtgatttgtgacccgtttttcctat |
6237 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 67; Significance: 9e-30; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 143 - 285
Target Start/End: Original strand, 11110658 - 11110800
Alignment:
| Q |
143 |
cttaaagaaagataaattgcattgcattgaaatgtaagtggttcatcaaatctttacctaaattctatgactcttttctctctatgatgtgtactttgaa |
242 |
Q |
| |
|
|||||||||| | ||||||||||||||||||||||| || |||||||||||||||| || ||| ||||||| ||||||||||| | ||||||||| |
|
|
| T |
11110658 |
cttaaagaaacagtaattgcattgcattgaaatgtaaatgattcatcaaatctttacatacattttatgactattttctctctacaccgggtactttgag |
11110757 |
T |
|
| Q |
243 |
ttttagaattatgtaagagtaattcgtgacccgtttttcctat |
285 |
Q |
| |
|
|||||||||| ||||| ||| ||| |||||||||||||||||| |
|
|
| T |
11110758 |
ttttagaattctgtaatagtgatttgtgacccgtttttcctat |
11110800 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 37; Significance: 0.000000000007; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 143 - 219
Target Start/End: Original strand, 13109877 - 13109953
Alignment:
| Q |
143 |
cttaaagaaagataaattgcattgcattgaaatgtaagtggttcatcaaatctttacctaaattctatgactctttt |
219 |
Q |
| |
|
|||||||||| |||||||||||||||||||| | | ||||||||||||||||||| || ||| | |||||||||| |
|
|
| T |
13109877 |
cttaaagaaaaataaattgcattgcattgaattaaagatggttcatcaaatctttacatatattttgtgactctttt |
13109953 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 143 - 223
Target Start/End: Complemental strand, 18672588 - 18672508
Alignment:
| Q |
143 |
cttaaagaaagataaattgcattgcattgaaatgtaagtggttcatcaaatctttacctaaattctatgactcttttctct |
223 |
Q |
| |
|
|||||||||| ||||||| |||||||||||| | | || |||||||||||||||| || | | | |||||||||||||| |
|
|
| T |
18672588 |
cttaaagaaaaataaattacattgcattgaattaaagatgcttcatcaaatctttacatacactttgtgactcttttctct |
18672508 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 143 - 226
Target Start/End: Original strand, 24476310 - 24476394
Alignment:
| Q |
143 |
cttaaagaaagataaattgcattgcattgaaatgtaa-gtggttcatcaaatctttacctaaattctatgactcttttctctcta |
226 |
Q |
| |
|
|||||||||| ||||||||||||||||||||| || |||||| | |||||| |||| | ||||||||||| ||||||||||| |
|
|
| T |
24476310 |
cttaaagaaatgtaaattgcattgcattgaaataaaatgtggtttagcaaatcattacaaacattctatgactattttctctcta |
24476394 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 181 - 258
Target Start/End: Original strand, 6038988 - 6039065
Alignment:
| Q |
181 |
tggttcatcaaatctttacctaaattctatgactcttttctctctatgatgtgtactttgaattttagaattatgtaa |
258 |
Q |
| |
|
||||||| ||||||||||| || ||| | ||||||||||||||||| | || ||||||||| | || ||||| ||||| |
|
|
| T |
6038988 |
tggttcaacaaatctttacatacattatgtgactcttttctctctacgctgggtactttgagtgtttgaattctgtaa |
6039065 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University