View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17407_high_1 (Length: 689)
Name: NF17407_high_1
Description: NF17407
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17407_high_1 |
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Alignment Details
Target: chr8 (Bit Score: 412; Significance: 0; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 412; E-Value: 0
Query Start/End: Original strand, 134 - 587
Target Start/End: Original strand, 11151303 - 11151753
Alignment:
| Q |
134 |
atgtcttcattactgcacataaaattaatgtcaaatgaaaaaacatagaagaaaccctgtttcattacctggataacaattaaccaaactgtagaatata |
233 |
Q |
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| T |
11151303 |
atgtcttcattactgaacataaaattaatgtcaaatgaaaaaacatagaagaaaccctgtttcattacctggataacaattaaccaaactgtagaatata |
11151402 |
T |
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| Q |
234 |
tgcttttgaatttcacatttatagtactattattgttgaagttcttcaattcatttagctttgatatgcagactttaaacaggaagaggttaaaaattca |
333 |
Q |
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| T |
11151403 |
tgcttttgaatttcacatttatagtactatt---gttgaagttcttcaattcatttagctttgatatgcagactttaaacaggaagaggttaaaaattca |
11151499 |
T |
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| Q |
334 |
aattcaagtggtacatagatactctttatttggattatagaatccaaaccatatttcggattgtataatatgaacaatgtgaaaattgaaggcaagccta |
433 |
Q |
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| T |
11151500 |
aattcaagtggtacatagatactctttatttgaattatagaatccaaaccatatttcggattgtataatatgaacaatgtgaaaattgaaggcaagccta |
11151599 |
T |
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| Q |
434 |
gagctatactgatgttcggtgcttgtaaatatatggttcgacaactacaatctgaacacctttcagataatagaatatgaaatctgtcaaatcccacata |
533 |
Q |
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| T |
11151600 |
gagctataccgatgttcggtgcttgtaaatatatggttcgacaactacaatctgaacaccttttagataatagaatatgaaatctgtcaaaccccacata |
11151699 |
T |
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| Q |
534 |
agatcattttataagtaaaatatagtgtatagattgacacatttcggattatat |
587 |
Q |
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| T |
11151700 |
agatcattttataagtaaaatatagtgtatagatagacacattttggattatat |
11151753 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 13 - 72
Target Start/End: Original strand, 11151246 - 11151305
Alignment:
| Q |
13 |
agcataggaagtgagaaattaaaattaaactactaatattgatttgtggaattcttcatg |
72 |
Q |
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| T |
11151246 |
agcataggaagtgagaaattaaaattaaactactaatattgatttgtggaattcttcatg |
11151305 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 27 - 106
Target Start/End: Complemental strand, 11173028 - 11172945
Alignment:
| Q |
27 |
gaaattaaaattaaacta--ctaata--ttgatttgtggaattcttcatgattgttatatgttacaactaacttcttcatatcc |
106 |
Q |
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| T |
11173028 |
gaaattgaaattaaactatactaataaattggtttgtgagattgttcatgattgttatatgtttccactaacttcttcagatcc |
11172945 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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