View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17407_high_18 (Length: 269)
Name: NF17407_high_18
Description: NF17407
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17407_high_18 |
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Alignment Details
Target: chr3 (Bit Score: 123; Significance: 3e-63; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 19 - 165
Target Start/End: Complemental strand, 50768792 - 50768646
Alignment:
| Q |
19 |
tacagtttccttgctttagcttaattatttgtaccttactttgttcgtacaattatatttatccccctatgtctttctttatcaagataccgttgagagc |
118 |
Q |
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|||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||| |
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| T |
50768792 |
tacaatttccttgcattagcttaattatttgtaccttactttgttcgtacaattatatttatacccctatgtctttctttatcaagctaccgttgagagc |
50768693 |
T |
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| Q |
119 |
acatgattctttttgaatctataggatatgataatttatattgactt |
165 |
Q |
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| T |
50768692 |
acatgattctttttgaatctatagcatatgataaattatattgactt |
50768646 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 211 - 248
Target Start/End: Complemental strand, 50768604 - 50768567
Alignment:
| Q |
211 |
aatcttgatatgctaaccaatagaaggccaaatatttg |
248 |
Q |
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| T |
50768604 |
aatcttgatatgctaaccaatagaaggccaaatatttg |
50768567 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 123; Significance: 3e-63; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 19 - 165
Target Start/End: Original strand, 26824365 - 26824511
Alignment:
| Q |
19 |
tacagtttccttgctttagcttaattatttgtaccttactttgttcgtacaattatatttatccccctatgtctttctttatcaagataccgttgagagc |
118 |
Q |
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|||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||| |
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| T |
26824365 |
tacaatttccttgcattagcttaattatttgtaccttactttgttcgtacaattatatttatacccctatgtctttctttatcaagctaccgttgagagc |
26824464 |
T |
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| Q |
119 |
acatgattctttttgaatctataggatatgataatttatattgactt |
165 |
Q |
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|||||||||||||||||||||||| ||||||||| |||||||||||| |
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| T |
26824465 |
acatgattctttttgaatctatagcatatgataaattatattgactt |
26824511 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 211 - 248
Target Start/End: Original strand, 26824553 - 26824590
Alignment:
| Q |
211 |
aatcttgatatgctaaccaatagaaggccaaatatttg |
248 |
Q |
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|||||||||||||||||||||||||||||||||||||| |
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| T |
26824553 |
aatcttgatatgctaaccaatagaaggccaaatatttg |
26824590 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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