View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17407_high_2 (Length: 594)
Name: NF17407_high_2
Description: NF17407
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17407_high_2 |
 | |
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| [»] scaffold0096 (1 HSPs) |
| | |
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| [»] scaffold0088 (1 HSPs) |
| | |
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Alignment Details
Target: chr6 (Bit Score: 409; Significance: 0; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 409; E-Value: 0
Query Start/End: Original strand, 11 - 577
Target Start/End: Complemental strand, 30391691 - 30391135
Alignment:
| Q |
11 |
tatattattctcccccaaatttaatccactctctctataatacctttcaaggaaaaaggcgaagggagcaagagcaatagttgcaatggc--tatgatat |
108 |
Q |
| |
|
|||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| || ||||| |
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| T |
30391691 |
tatattcttctctcccaaatttaatccactctctctataatacctttcaaggaaaaaggcgaaggg---------------tgcaatggcattacgatat |
30391607 |
T |
|
| Q |
109 |
accacaaaaacataatgactcatgcccttgttaaaggcagccattgtaataacaaacatgctagccgaaccaagttcgatacctaacataagcaagtatg |
208 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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|
| T |
30391606 |
accacaaaaacataatgactcatgcccttgttaaaggcagccattgtaataacaaacatgctagccgaaccaagttcgatacctaacataggcaagtatg |
30391507 |
T |
|
| Q |
209 |
atttataaatgttgaaccacgcattaactttctcacaaaatgttaactcacccatcttgtctaaatt---tctatgtgttgcgaggaagagaaactttgt |
305 |
Q |
| |
|
|||||||||| |||||||| |||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||| |||||| ||||||||||| |
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|
| T |
30391506 |
atttataaattttgaaccatgcattaactttctcacaaaatgttaactcacccatcatgtctaaataatatctatgtgttgtgaggaaaagaaactttgt |
30391407 |
T |
|
| Q |
306 |
atacttgaatatgtttgcgtgggatgagtggaagagtaaggttatccatctctataatttatacccaaagttcagcataattccaaatgattttaattat |
405 |
Q |
| |
|
|||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||| |
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|
| T |
30391406 |
atacttgattatgtttgcgtgggatgagtagaagagtaaggttatccatctctataatttatacccaaagttcagcataattccgaataattttaattat |
30391307 |
T |
|
| Q |
406 |
tataataataataattctcgtaaggttagctcagttggtagggatattgctaagtgacattgattttggtgcatgctaagtgacattgatggctctgctt |
505 |
Q |
| |
|
||||| ||||||||| | ||| || |||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
30391306 |
tataagaataataatccccgtgagcttagctcagttgttagggatattgctaagcgacattgattttggtgcatgctaagtgacattgatggctctgctt |
30391207 |
T |
|
| Q |
506 |
tggatcatccttctcatggtgtcattgggattgtgtttcgatctcaccttgctgtttttggaggagctcttg |
577 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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|
| T |
30391206 |
tggatcatccttctcatggtgtcattgggattgtgtttcgatctcaccttgctgtttttagaggagctcttg |
30391135 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 47 - 98
Target Start/End: Complemental strand, 32164301 - 32164250
Alignment:
| Q |
47 |
ataatacctttcaaggaaaaaggcgaagggagcaagagcaatagttgcaatg |
98 |
Q |
| |
|
||||||||||||||||||| | || || |||||||||||||||||||||||| |
|
|
| T |
32164301 |
ataatacctttcaaggaaataagcaaatggagcaagagcaatagttgcaatg |
32164250 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 418 - 455
Target Start/End: Original strand, 743559 - 743596
Alignment:
| Q |
418 |
aattctcgtaaggttagctcagttggtagggatattgc |
455 |
Q |
| |
|
||||||||| || ||||||||||||||||||||||||| |
|
|
| T |
743559 |
aattctcgtgagcttagctcagttggtagggatattgc |
743596 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0096 (Bit Score: 162; Significance: 4e-86; HSPs: 1)
Name: scaffold0096
Description:
Target: scaffold0096; HSP #1
Raw Score: 162; E-Value: 4e-86
Query Start/End: Original strand, 51 - 415
Target Start/End: Original strand, 47163 - 47516
Alignment:
| Q |
51 |
tacctttcaaggaaaaaggcgaagggagcaagagcaatagttgcaatggc--tatgatataccacaaaaacataatgactcatgcccttgttaaaggcag |
148 |
Q |
| |
|
|||||||| |||||| |||| |||||||| |||||||| || ||||||| || |||||||||||||||| |||||||||||||||||||||||||||| |
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|
| T |
47163 |
tacctttctaggaaataggctaagggagcgagagcaattgtggcaatggtattacgatataccacaaaaacgtaatgactcatgcccttgttaaaggcag |
47262 |
T |
|
| Q |
149 |
ccattgtaataacaaacatgctagccgaaccaagttcgatacctaacataagcaagtatgatttataaatgttgaaccacgcattaactttctcacaaaa |
248 |
Q |
| |
|
||| || || |||||||||| ||| |||||||||| ||| || |||||||| |||||||||||||||| ||| | |||||||||||||||| ||||| |
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|
| T |
47263 |
tcatggtgatgacaaacatgccagcagaaccaagttggattccgaacataaggaagtatgatttataaaatttgcagcacgcattaactttctggcaaaa |
47362 |
T |
|
| Q |
249 |
tgttaactcacccatcttgtctaaatttctatgtgttgcgaggaagagaaactttgtatacttgaatatgtttgcgtgggatgagtggaagagtaaggtt |
348 |
Q |
| |
|
|||||||||| ||||||| ||| ||| ||||||||||||||||||||||||| ||||||||||| ||||||||| |||||||||||| |
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|
| T |
47363 |
tgttaactcagccatcttatcttaat--------------aggaagagaaactttgtatacttgattatgtttgcgtaggatgagtgcaagagtaaggtt |
47448 |
T |
|
| Q |
349 |
atccatctctata-atttatacccaaagttcagcataattccaaatgattttaattattataataata |
415 |
Q |
| |
|
|| |||||||||| |||||| |||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47449 |
atacatctctatatttttatagccaaagtttagcataattccaaatgattttaattattataataata |
47516 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 157; Significance: 3e-83; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 157; E-Value: 3e-83
Query Start/End: Original strand, 141 - 415
Target Start/End: Complemental strand, 21094616 - 21094331
Alignment:
| Q |
141 |
aaaggcagccattgtaataacaaacatgctagccgaaccaagttcgatacctaacataagcaagtatgatttataaatgttgaaccacgcattaactttc |
240 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||| ||| || |||||||| |||||||||||||| | ||| | ||||||||||||||| |
|
|
| T |
21094616 |
aaaggcagccattgtaataacaaacatgctagcagaaccaagttggattccgaacataaggaagtatgatttatagaatttgcagcacgcattaactttc |
21094517 |
T |
|
| Q |
241 |
tcacaaaatgttaactcacccatcttgtct-----------aaatttctatgtgttgcgaggaagagaaactttgtatactt-gaatatgtttgcgtggg |
328 |
Q |
| |
|
| |||||||||||||||||||||||| ||| |||||||||||||||| |||||||||||||||||||||||| || |||||||| ||||| |
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|
| T |
21094516 |
taacaaaatgttaactcacccatcttatcttaatcctctctaaatttctatgtgttgtgaggaagagaaactttgtatactttgattatgtttgagtggg |
21094417 |
T |
|
| Q |
329 |
atgagtggaagagtaaggttatccatctctataatttatacccaaagttcagcataattccaaatgattttaattattataataata |
415 |
Q |
| |
|
||||||| |||||||||||||| |||||||||| |||||| || ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
21094416 |
atgagtgcaagagtaaggttatacatctctata-tttataacctaagttcagcataattccaaatgattttaattattataataata |
21094331 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 93; E-Value: 5e-45
Query Start/End: Original strand, 268 - 415
Target Start/End: Original strand, 10626534 - 10626681
Alignment:
| Q |
268 |
tctaaatttct-atgtgttgcgaggaagagaaactttgtatacttgaatatgtttgcgtgggatgagtggaagagtaaggttatccatctctataattta |
366 |
Q |
| |
|
||||||||||| |||||||| |||||||||||||||||||||||||| |||||||| ||| |||||||| | |||||||||||||||||||||| ||||| |
|
|
| T |
10626534 |
tctaaatttcttatgtgttgtgaggaagagaaactttgtatacttgattatgtttgagtgtgatgagtgaatgagtaaggttatccatctctat-attta |
10626632 |
T |
|
| Q |
367 |
tacccaaagttcagcataattccaaatgattttaattattataataata |
415 |
Q |
| |
|
||||||||||||| ||||||| ||||| |||||| |||||||||||||| |
|
|
| T |
10626633 |
tacccaaagttcaacataatttcaaattattttagttattataataata |
10626681 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 83; E-Value: 5e-39
Query Start/End: Original strand, 47 - 266
Target Start/End: Original strand, 10626289 - 10626510
Alignment:
| Q |
47 |
ataatacctttcaaggaaaaaggcgaagggagcaagagcaatagttgcaatggc--tatgatataccacaaaaacataatgactcatgcccttgttaaag |
144 |
Q |
| |
|
||||||||||||||||||||| || || |||||||||||||||||||||||| | || ||||||||||||||| ||| ||||||||||||||||||| | |
|
|
| T |
10626289 |
ataatacctttcaaggaaaaaagcaaatggagcaagagcaatagttgcaatgacattacgatataccacaaaaatatagtgactcatgcccttgttaagg |
10626388 |
T |
|
| Q |
145 |
gcagccattgtaataacaaacatgctagccgaaccaagttcgatacctaacataagcaagtatgatttataaatgttgaaccacgcattaactttctcac |
244 |
Q |
| |
|
||| |||| || | |||| |||| | |||||| |||| || | || || |||||||| |||||||| || | | ||||| ||| |||||||||||| |
|
|
| T |
10626389 |
gcatccatagtcagaacatacattccagccgatccaaattgtaaacttaggataagcaaatatgatttggaatttctaaaccatgcactaactttctcac |
10626488 |
T |
|
| Q |
245 |
aaaatgttaactcacccatctt |
266 |
Q |
| |
|
|||||||||||||||||||||| |
|
|
| T |
10626489 |
aaaatgttaactcacccatctt |
10626510 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 415 - 455
Target Start/End: Complemental strand, 37662634 - 37662594
Alignment:
| Q |
415 |
aataattctcgtaaggttagctcagttggtagggatattgc |
455 |
Q |
| |
|
|||||| ||||| || ||||||||||||||||||||||||| |
|
|
| T |
37662634 |
aataatcctcgtgagcttagctcagttggtagggatattgc |
37662594 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000005; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 417 - 455
Target Start/End: Complemental strand, 30388582 - 30388544
Alignment:
| Q |
417 |
taattctcgtaaggttagctcagttggtagggatattgc |
455 |
Q |
| |
|
|||||||||| || ||||||||||||||||||||||||| |
|
|
| T |
30388582 |
taattctcgtgagcttagctcagttggtagggatattgc |
30388544 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 412 - 454
Target Start/End: Complemental strand, 42433172 - 42433130
Alignment:
| Q |
412 |
aataataattctcgtaaggttagctcagttggtagggatattg |
454 |
Q |
| |
|
|||||| ||||||||||| |||||| ||||||||||||||||| |
|
|
| T |
42433172 |
aataatgattctcgtaagtttagcttagttggtagggatattg |
42433130 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 419 - 455
Target Start/End: Original strand, 41465831 - 41465867
Alignment:
| Q |
419 |
attctcgtaaggttagctcagttggtagggatattgc |
455 |
Q |
| |
|
|||| |||||| ||||||||||||||||||||||||| |
|
|
| T |
41465831 |
attcccgtaagcttagctcagttggtagggatattgc |
41465867 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 417 - 455
Target Start/End: Complemental strand, 39696412 - 39696374
Alignment:
| Q |
417 |
taattctcgtaaggttagctcagttggtagggatattgc |
455 |
Q |
| |
|
|||||||||| || ||||||||||||||||||||||||| |
|
|
| T |
39696412 |
taattctcgtgagcttagctcagttggtagggatattgc |
39696374 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 417 - 455
Target Start/End: Original strand, 26942748 - 26942786
Alignment:
| Q |
417 |
taattctcgtaaggttagctcagttggtagggatattgc |
455 |
Q |
| |
|
|||||| |||||| ||||||||||||||||||||||||| |
|
|
| T |
26942748 |
taattcccgtaagcttagctcagttggtagggatattgc |
26942786 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0088 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: scaffold0088
Description:
Target: scaffold0088; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 407 - 455
Target Start/End: Complemental strand, 10911 - 10863
Alignment:
| Q |
407 |
ataataataataattctcgtaaggttagctcagttggtagggatattgc |
455 |
Q |
| |
|
|||||||| ||||| | ||| || ||||||||||||||||||||||||| |
|
|
| T |
10911 |
ataataattataatccccgtgagcttagctcagttggtagggatattgc |
10863 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 419 - 455
Target Start/End: Complemental strand, 10587350 - 10587314
Alignment:
| Q |
419 |
attctcgtaaggttagctcagttggtagggatattgc |
455 |
Q |
| |
|
|||| |||||| ||||||||||||||||||||||||| |
|
|
| T |
10587350 |
attcccgtaagcttagctcagttggtagggatattgc |
10587314 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 415 - 455
Target Start/End: Original strand, 6414061 - 6414101
Alignment:
| Q |
415 |
aataattctcgtaaggttagctcagttggtagggatattgc |
455 |
Q |
| |
|
|||||||||||| || ||| ||||||||||||||||||||| |
|
|
| T |
6414061 |
aataattctcgtgagcttaactcagttggtagggatattgc |
6414101 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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