View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17407_high_20 (Length: 259)
Name: NF17407_high_20
Description: NF17407
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17407_high_20 |
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Alignment Details
Target: chr6 (Bit Score: 218; Significance: 1e-120; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 17 - 250
Target Start/End: Complemental strand, 32679351 - 32679118
Alignment:
| Q |
17 |
aggtatgacttactaatacatccgccggtgctttcaactttcaggttgttttgccagagggttcaaaagatattttaccatctgttccattttctatgaa |
116 |
Q |
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||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
32679351 |
aggtatgacttactaatacatccgccggtgcttgcaactttcaggttgttttgccagagggttcaaaagatattttaccatctgttccatttcctatgaa |
32679252 |
T |
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| Q |
117 |
agaaagacatgaggtattactatttgatatcttcttccaagcacaaatgataagatatacacgtcattcccttgtttgggttttatagtccatccatata |
216 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
32679251 |
agaaagacatgaggtattactatttgatatcttcttccaagcacaaatgataagatatacatgtcattcccttgtttgggttttatagtccatccatata |
32679152 |
T |
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| Q |
217 |
attgtcgcagacaaagttttcacacttggatatt |
250 |
Q |
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||||||||| |||||||||||||||||||||||| |
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| T |
32679151 |
attgtcgcaaacaaagttttcacacttggatatt |
32679118 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 148; Significance: 3e-78; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 148; E-Value: 3e-78
Query Start/End: Original strand, 17 - 250
Target Start/End: Original strand, 54225268 - 54225499
Alignment:
| Q |
17 |
aggtatgacttactaatacatccgccggtgctttcaactttcaggttgttttgccagagggttcaaaagatattttaccatctgttccattttctatgaa |
116 |
Q |
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|||||||||||||||||||||| ||| |||||| ||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||| || |||| |
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| T |
54225268 |
aggtatgacttactaatacatctgccagtgcttgcaactttcaggttgtcttgccagagggttcaaaagatatttcaccatctgttccatttcctgtgaa |
54225367 |
T |
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| Q |
117 |
agaaagacatgaggtattacta-tttgatatcttcttccaagcacaaatgataagatatacacgtcattcccttgtttgggttttatagtccatccatat |
215 |
Q |
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|||||||||||||||||| ||| |||||||||||||||||| |||||||| |||||| | |||||||| |||||||||||||||| ||||||||||| |
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| T |
54225368 |
agaaagacatgaggtattgctattttgatatcttcttccaa--ccaaatgat-agatatctatgtcattccattgtttgggttttataatccatccatat |
54225464 |
T |
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| Q |
216 |
aattgtcgcagacaaagttttcacacttggatatt |
250 |
Q |
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|||||| |||||||||||||||||||||||||||| |
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| T |
54225465 |
aattgttgcagacaaagttttcacacttggatatt |
54225499 |
T |
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