View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17407_high_22 (Length: 253)
Name: NF17407_high_22
Description: NF17407
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17407_high_22 |
 | |
|
| [»] chr4 (1 HSPs) |
| |
|
Alignment Details
Target: chr4 (Bit Score: 232; Significance: 1e-128; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 10 - 253
Target Start/End: Complemental strand, 24187535 - 24187292
Alignment:
| Q |
10 |
aggagcagagaacctttttctcctttttgcggccattgctttagtgtcacttgtgttcattgtaacttctgtcccagagacaaaaggcttgagcttagaa |
109 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24187535 |
aggagcagagaacctttttctcctttttgcagccattgctttagtgtcacttgtgttcattgtaacttctgtcccagagacaaaaggcttgagcttagaa |
24187436 |
T |
|
| Q |
110 |
gaaattgaatccaaaatcttgaagtgacagcagaactagcaccttttgatgtaaatgtatcataatttgtcgcattgtgtatgtcacatgtgtcggattt |
209 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
24187435 |
gaaattgaatccaaaatcttgaagtgacagcagaactagcaccttttgatgtaaatgtatcataatttgtcgcattgtgtatatcacatgtgtcggattt |
24187336 |
T |
|
| Q |
210 |
gatgttcatgataatttttgcattaagaagataatattataatc |
253 |
Q |
| |
|
||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24187335 |
gattttcatgataatttttgcattaagaagataatattataatc |
24187292 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University