View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17407_high_6 (Length: 507)
Name: NF17407_high_6
Description: NF17407
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17407_high_6 |
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Alignment Details
Target: chr1 (Bit Score: 431; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 431; E-Value: 0
Query Start/End: Original strand, 17 - 500
Target Start/End: Original strand, 739986 - 740467
Alignment:
| Q |
17 |
aaacaaaatggagtcaaaatataactttattaatatgcaagccattgtttctcttaataaaggtatattttgactccaaaagatagaagaaacacaatgg |
116 |
Q |
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| T |
739986 |
aaacaaattggagtcaaaatatacctttattaatatgcaagccattgtttctcttaataaaggtatattttgactccaaaagatagaagaaacacaacgg |
740085 |
T |
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| Q |
117 |
tgtatcagttttggaatgctaccttcctctcaaattaaaaaatctagatcgtaactgcatatatggtcaagctggtctttttgatttattcaattgtatg |
216 |
Q |
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| T |
740086 |
tgtatcagttttggaatgctaccttcctctcaaattaaaaaatctagatcgtaactgcatatatggtcaagctggtcttttttatttactcaattgtatg |
740185 |
T |
|
| Q |
217 |
gtgtggacataaatataaatt-aaaaaatgaggaggagagttttaaaataaaatgaattagtgaaggtagttggtagagagaggagccaaaaagttatgc |
315 |
Q |
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| T |
740186 |
gtgtggacataaatataaattaaaaaaatgaggagtagagttttaaaataaaatgaattagtgatggtagttggtagagagaggagccaaaaagttatgc |
740285 |
T |
|
| Q |
316 |
gagtgagttatcatatataagagataaaacttaatttacattggagtacatcacatttacatgtcattctcttcttcttcaccttttctaacctaaaatc |
415 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
740286 |
gagtgagttatcatatataagagataaaacttaatttacattggagtacatcacatttacatgtcattc---tcttcttcaccttttctaacctaaaatc |
740382 |
T |
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| Q |
416 |
aaaaccaaaaccgtttttgcacattcattcactatggcagcaacatggcgtgattcaactactcaaaaacaaaattgttcatctc |
500 |
Q |
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| T |
740383 |
aaaaccaaaaccgtttttgcacattcattcactatggcagtaacatggcgtgattcaactactcaaaaacaaaattgttcatctc |
740467 |
T |
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Target: chr4 (Bit Score: 44; Significance: 8e-16; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 410 - 500
Target Start/End: Original strand, 46980605 - 46980702
Alignment:
| Q |
410 |
aaaatcaaaaccaaaaccgtttttgcacattc-------attcactatggcagcaacatggcgtgattcaactactcaaaaacaaaattgttcatctc |
500 |
Q |
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|||| ||||||||||||||||||| ||||||| |||||||||||||||| ||||| ||||||||||||||||||||||||| || |||||| |
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| T |
46980605 |
aaaaccaaaaccaaaaccgtttttacacattcagtattcattcactatggcagcagcatggtctgattcaactactcaaaaacaaaatcgtccatctc |
46980702 |
T |
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