View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17407_low_14 (Length: 323)
Name: NF17407_low_14
Description: NF17407
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17407_low_14 |
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Alignment Details
Target: chr8 (Bit Score: 277; Significance: 1e-155; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 277; E-Value: 1e-155
Query Start/End: Original strand, 18 - 318
Target Start/End: Complemental strand, 34572368 - 34572068
Alignment:
| Q |
18 |
acatcagcacatttgttagctattttcggcaatttcaatacaactagaaccattgcaattttttaaaaccataagtactatcttatggtctgcttggatt |
117 |
Q |
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| T |
34572368 |
acatcagcacatttgttagctattttcggcaatttcaatacaactagaaccattacaattttttaaaaccataagtactatcttatggtctgcttggatt |
34572269 |
T |
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| Q |
118 |
gaattgtctaaatttcaaacaagtgttaatctctgaaccatttgtaaccataacatgggaaggtatgtgcagttcgcgactgaaaattgcatacaagagt |
217 |
Q |
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| T |
34572268 |
gaattgtctaaatttcaaacaagtgttaatctctgaaccatttgtaaccataacatgggaaggtatgtgcagttcgcgactgaatattgcatacaagagt |
34572169 |
T |
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| Q |
218 |
tattagaagcatatgacacaaacagaggaaacacaaacgatggatggaaaatggccacaatggagtttgagacatcaaaacgcagggtaggttcatctca |
317 |
Q |
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| T |
34572168 |
tattagaagcttatgacacaaacagaggaaacacaaatgatggatggaaaatggtcacaatggagtttgagacatcaaaacgcagggtaggttcatttca |
34572069 |
T |
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| Q |
318 |
c |
318 |
Q |
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| T |
34572068 |
c |
34572068 |
T |
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Target: chr4 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 177 - 255
Target Start/End: Complemental strand, 56282525 - 56282447
Alignment:
| Q |
177 |
aaggtatgtgcagttcgcgactgaaaattgcatacaagagttattagaagcatatgacacaaacagaggaaacacaaac |
255 |
Q |
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| T |
56282525 |
aaggtatgtacagtttgcaagtgaaagttgcatacaagagttactagcagcttcggacacaaacagaggaaactcaaac |
56282447 |
T |
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