View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17407_low_15 (Length: 320)

Name: NF17407_low_15
Description: NF17407
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17407_low_15
NF17407_low_15
[»] chr8 (4 HSPs)
chr8 (1-290)||(35592287-35592576)
chr8 (1-107)||(35581411-35581518)
chr8 (122-157)||(18808869-18808904)
chr8 (125-157)||(1876585-1876617)
[»] chr4 (7 HSPs)
chr4 (193-290)||(1696156-1696254)
chr4 (117-157)||(45900252-45900292)
chr4 (122-157)||(8297839-8297874)
chr4 (120-181)||(44646603-44646665)
chr4 (122-181)||(6316884-6316944)
chr4 (121-157)||(38945123-38945159)
chr4 (115-155)||(41981150-41981189)
[»] chr5 (3 HSPs)
chr5 (120-157)||(10410416-10410453)
chr5 (120-157)||(31672377-31672414)
chr5 (122-157)||(23023601-23023636)
[»] chr1 (8 HSPs)
chr1 (120-157)||(39150548-39150585)
chr1 (122-157)||(40570657-40570692)
chr1 (195-261)||(9590909-9590975)
chr1 (199-253)||(48947250-48947304)
chr1 (116-157)||(39912313-39912354)
chr1 (121-157)||(34445636-34445672)
chr1 (117-157)||(39914708-39914748)
chr1 (122-181)||(45584507-45584567)
[»] chr7 (5 HSPs)
chr7 (121-157)||(27123241-27123277)
chr7 (120-153)||(7653552-7653585)
chr7 (116-157)||(34299846-34299887)
chr7 (121-157)||(27870395-27870431)
chr7 (121-157)||(28770444-28770480)
[»] chr3 (3 HSPs)
chr3 (122-157)||(17517521-17517556)
chr3 (124-157)||(52308986-52309019)
chr3 (122-181)||(34758897-34758957)
[»] chr2 (1 HSPs)
chr2 (120-157)||(2769349-2769385)


Alignment Details
Target: chr8 (Bit Score: 241; Significance: 1e-133; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 1 - 290
Target Start/End: Original strand, 35592287 - 35592576
Alignment:
Q  1 aattgcatactcaattaactagaaaaatatactaagcaaataatatggttttgtggtttaaatatgtttgcagtccacaaaaaatcacagatttttaaga 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35592287 aattgcatactcaattaactagaaaaatatactaagcaaataatatggttttgtggtttaaatatgtttgcagtccacaaaaaatcacagatttttaaga 35592386  T
Q  101 ttagttcctgtaagtaaaaatgggtcttgttaacgagtgcacccggggcactctttacgatttaaaaataagaaattatttcgtnnnnnnntcaaatatt 200  Q
    |||||||||||||| ||||||||||| |||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||       |||||||||    
T  35592387 ttagttcctgtaagaaaaaatgggtcctgttaacgagtgcacccgggacactctttaggatttaaaaataagaaattatttcgtaaaaaagtcaaatatt 35592486  T
Q  201 tcaatttccaaggcaatgatcagacaaatttccataaaatgttaccatttaaaagttttaaaagtgtctcgaggacactcgttaacattt 290  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||| |||||||||||||||    
T  35592487 tcaatttccaaggcaatgatcagacaaatttccataaaaagttaccatttaaaaattttaaaagtgtctcgagggcactcgttaacattt 35592576  T

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Target: chr8; HSP #2
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 1 - 107
Target Start/End: Original strand, 35581411 - 35581518
Alignment:
Q  1 aattgcatactcaattaactagaaaaatatactaagcaaataatatggttttgtggtttaaatatgtttgcagtccacaaaaaatcacagat-ttttaag 99  Q
    ||||||||| ||||||||||| ||||||||| |||||||||||||||||||| ||||||||| |||||||||||||  | |||||||||||| |||||||    
T  35581411 aattgcatattcaattaactaaaaaaatataataagcaaataatatggttttttggtttaaacatgtttgcagtccttataaaatcacagatcttttaag 35581510  T
Q  100 attagttc 107  Q
     |||||||    
T  35581511 tttagttc 35581518  T

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Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 122 - 157
Target Start/End: Complemental strand, 18808904 - 18808869
Alignment:
Q  122 gggtcttgttaacgagtgcacccggggcactcttta 157  Q
    ||||||||||||||||||| ||||||||||||||||    
T  18808904 gggtcttgttaacgagtgctcccggggcactcttta 18808869  T

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Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 125 - 157
Target Start/End: Complemental strand, 1876617 - 1876585
Alignment:
Q  125 tcttgttaacgagtgcacccggggcactcttta 157  Q
    |||||||||||||||| ||||||||||||||||    
T  1876617 tcttgttaacgagtgcccccggggcactcttta 1876585  T

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Target: chr4 (Bit Score: 35; Significance: 0.0000000001; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 193 - 290
Target Start/End: Complemental strand, 1696254 - 1696156
Alignment:
Q  193 caaatatttcaatttccaaggcaatgatcagacaaatttccataaaatgttaccatttaaaagttttaaa-agtgtctcgaggacactcgttaacattt 290  Q
    ||||||||||||||||| | ||| |||| | | | |||| || |||| ||||| |||||||||| ||||| ||||||||| ||||||| ||||||||||    
T  1696254 caaatatttcaatttccgatgcattgattacatacattttcaaaaaaagttactatttaaaagtcttaaagagtgtctcggggacactggttaacattt 1696156  T

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Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 117 - 157
Target Start/End: Complemental strand, 45900292 - 45900252
Alignment:
Q  117 aaaatgggtcttgttaacgagtgcacccggggcactcttta 157  Q
    |||||||||||||||||||||||| |||| |||||||||||    
T  45900292 aaaatgggtcttgttaacgagtgcccccgaggcactcttta 45900252  T

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Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 122 - 157
Target Start/End: Original strand, 8297839 - 8297874
Alignment:
Q  122 gggtcttgttaacgagtgcacccggggcactcttta 157  Q
    ||||||||||||||||||| ||||||||||||||||    
T  8297839 gggtcttgttaacgagtgcccccggggcactcttta 8297874  T

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Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 120 - 181
Target Start/End: Complemental strand, 44646665 - 44646603
Alignment:
Q  120 atgggtcttgttaacgagtgcacccggggcactcttt-acgatttaaaaataagaaattattt 181  Q
    ||||||||||||||||||||| ||||||||| ||||| | ||||| |||| |||||| |||||    
T  44646665 atgggtcttgttaacgagtgcccccggggcattctttaaggatttcaaaagaagaaactattt 44646603  T

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Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 122 - 181
Target Start/End: Complemental strand, 6316944 - 6316884
Alignment:
Q  122 gggtcttgttaacgagtgcacccggggcactcttt-acgatttaaaaataagaaattattt 181  Q
    |||||||||||||||||||  |||||||||||||| | ||||| |||| ||||||| ||||    
T  6316944 gggtcttgttaacgagtgcctccggggcactctttaaagatttcaaaagaagaaataattt 6316884  T

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Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 121 - 157
Target Start/End: Complemental strand, 38945159 - 38945123
Alignment:
Q  121 tgggtcttgttaacgagtgcacccggggcactcttta 157  Q
    |||||||||||||||||||| |||| |||||||||||    
T  38945159 tgggtcttgttaacgagtgcccccgcggcactcttta 38945123  T

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Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 115 - 155
Target Start/End: Complemental strand, 41981189 - 41981150
Alignment:
Q  115 taaaaatgggtcttgttaacgagtgcacccggggcactctt 155  Q
    ||||| |||||||||||||||||||| ||||||||||||||    
T  41981189 taaaattgggtcttgttaacgagtgc-cccggggcactctt 41981150  T

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Target: chr5 (Bit Score: 34; Significance: 0.0000000005; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 120 - 157
Target Start/End: Original strand, 10410416 - 10410453
Alignment:
Q  120 atgggtcttgttaacgagtgcacccggggcactcttta 157  Q
    ||||||||||||||||||||| ||||||||||||||||    
T  10410416 atgggtcttgttaacgagtgcccccggggcactcttta 10410453  T

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Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 120 - 157
Target Start/End: Original strand, 31672377 - 31672414
Alignment:
Q  120 atgggtcttgttaacgagtgcacccggggcactcttta 157  Q
    ||||||||||||||||||||| ||||||||||||||||    
T  31672377 atgggtcttgttaacgagtgcccccggggcactcttta 31672414  T

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Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 122 - 157
Target Start/End: Original strand, 23023601 - 23023636
Alignment:
Q  122 gggtcttgttaacgagtgcacccggggcactcttta 157  Q
    ||||||||||||||||||| ||||||||||||||||    
T  23023601 gggtcttgttaacgagtgcccccggggcactcttta 23023636  T

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Target: chr1 (Bit Score: 34; Significance: 0.0000000005; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 120 - 157
Target Start/End: Original strand, 39150548 - 39150585
Alignment:
Q  120 atgggtcttgttaacgagtgcacccggggcactcttta 157  Q
    ||||||||||||||||||||| ||||||||||||||||    
T  39150548 atgggtcttgttaacgagtgcccccggggcactcttta 39150585  T

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Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 122 - 157
Target Start/End: Original strand, 40570657 - 40570692
Alignment:
Q  122 gggtcttgttaacgagtgcacccggggcactcttta 157  Q
    ||||||||||||||||||| ||||||||||||||||    
T  40570657 gggtcttgttaacgagtgcccccggggcactcttta 40570692  T

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Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 195 - 261
Target Start/End: Original strand, 9590909 - 9590975
Alignment:
Q  195 aatatttcaatttccaaggcaatgatcagacaaatttccataaaatgttaccatttaaaagttttaa 261  Q
    |||||||| |||| ||| | | |||| | ||| |||| |||||||||||||||||||||||||||||    
T  9590909 aatatttcgatttacaatgtattgattacacacattttcataaaatgttaccatttaaaagttttaa 9590975  T

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Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 199 - 253
Target Start/End: Original strand, 48947250 - 48947304
Alignment:
Q  199 tttcaatttccaaggcaatgatcagacaaatttccataaaatgttaccatttaaa 253  Q
    ||||||||||||| ||| |||| | |||||||| ||||||| |||||||||||||    
T  48947250 tttcaatttccaatgcactgattacacaaattttcataaaaagttaccatttaaa 48947304  T

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Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 116 - 157
Target Start/End: Complemental strand, 39912354 - 39912313
Alignment:
Q  116 aaaaatgggtcttgttaacgagtgcacccggggcactcttta 157  Q
    ||||| ||||||||||||||||||| |||||| |||||||||    
T  39912354 aaaaaagggtcttgttaacgagtgcccccgggacactcttta 39912313  T

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Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 121 - 157
Target Start/End: Original strand, 34445636 - 34445672
Alignment:
Q  121 tgggtcttgttaacgagtgcacccggggcactcttta 157  Q
    |||||||||||||||||||| ||||| ||||||||||    
T  34445636 tgggtcttgttaacgagtgcccccggagcactcttta 34445672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 117 - 157
Target Start/End: Complemental strand, 39914748 - 39914708
Alignment:
Q  117 aaaatgggtcttgttaacgagtgcacccggggcactcttta 157  Q
    ||||||||||||||||||||||||  ||||| |||||||||    
T  39914748 aaaatgggtcttgttaacgagtgcttccgggacactcttta 39914708  T

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Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 122 - 181
Target Start/End: Original strand, 45584507 - 45584567
Alignment:
Q  122 gggtcttgttaacgagtgcacccggggcactcttt-acgatttaaaaataagaaattattt 181  Q
    ||||||||||||||| ||| ||||||||||||||| | ||||  |||| ||||||||||||    
T  45584507 gggtcttgttaacgaatgcccccggggcactctttaaggattccaaaagaagaaattattt 45584567  T

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Target: chr7 (Bit Score: 33; Significance: 0.000000002; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 121 - 157
Target Start/End: Original strand, 27123241 - 27123277
Alignment:
Q  121 tgggtcttgttaacgagtgcacccggggcactcttta 157  Q
    |||||||||||||||||||| ||||||||||||||||    
T  27123241 tgggtcttgttaacgagtgcccccggggcactcttta 27123277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 120 - 153
Target Start/End: Original strand, 7653552 - 7653585
Alignment:
Q  120 atgggtcttgttaacgagtgcacccggggcactc 153  Q
    ||||||||||||||||||||| ||||||||||||    
T  7653552 atgggtcttgttaacgagtgctcccggggcactc 7653585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 116 - 157
Target Start/End: Complemental strand, 34299887 - 34299846
Alignment:
Q  116 aaaaatgggtcttgttaacgagtgcacccggggcactcttta 157  Q
    ||||| ||||||||||||||||||| ||||||||||| ||||    
T  34299887 aaaaaagggtcttgttaacgagtgcccccggggcacttttta 34299846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 121 - 157
Target Start/End: Original strand, 27870395 - 27870431
Alignment:
Q  121 tgggtcttgttaacgagtgcacccggggcactcttta 157  Q
    |||||||||||||||||||| ||||| ||||||||||    
T  27870395 tgggtcttgttaacgagtgctcccggagcactcttta 27870431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 121 - 157
Target Start/End: Original strand, 28770444 - 28770480
Alignment:
Q  121 tgggtcttgttaacgagtgcacccggggcactcttta 157  Q
    ||||||||||||||||||||  |||||||||||||||    
T  28770444 tgggtcttgttaacgagtgcctccggggcactcttta 28770480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 32; Significance: 0.000000007; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 122 - 157
Target Start/End: Original strand, 17517521 - 17517556
Alignment:
Q  122 gggtcttgttaacgagtgcacccggggcactcttta 157  Q
    ||||||||||||||||||| ||||||||||||||||    
T  17517521 gggtcttgttaacgagtgctcccggggcactcttta 17517556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 124 - 157
Target Start/End: Original strand, 52308986 - 52309019
Alignment:
Q  124 gtcttgttaacgagtgcacccggggcactcttta 157  Q
    ||||||||||||||||| ||||||||||||||||    
T  52308986 gtcttgttaacgagtgcccccggggcactcttta 52309019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 122 - 181
Target Start/End: Original strand, 34758897 - 34758957
Alignment:
Q  122 gggtcttgttaacgagtgcacccggggcactcttt-acgatttaaaaataagaaattattt 181  Q
    |||||||||||||||||||  |||||||||||||| | |||| ||||| ||| ||||||||    
T  34758897 gggtcttgttaacgagtgcctccggggcactctttaaggattcaaaaagaagtaattattt 34758957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 120 - 157
Target Start/End: Complemental strand, 2769385 - 2769349
Alignment:
Q  120 atgggtcttgttaacgagtgcacccggggcactcttta 157  Q
    ||||||||||||||||||||| ||||||||||||||||    
T  2769385 atgggtcttgttaacgagtgc-cccggggcactcttta 2769349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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