View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17407_low_16 (Length: 314)
Name: NF17407_low_16
Description: NF17407
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17407_low_16 |
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| [»] scaffold0361 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 235; Significance: 1e-130; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 54 - 296
Target Start/End: Complemental strand, 30010404 - 30010162
Alignment:
| Q |
54 |
gtcaaatttattacagattagatgtagtggtatatatggttctaagcggcgaaaattgattatgactgaattaaatttttaaaattcatttttagttaaa |
153 |
Q |
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| T |
30010404 |
gtcaaatttattacagattagatgtagtggtatatatggttctaagcggcgaaaattgattatgactgaattaaatttttaaaattcatttttagttaaa |
30010305 |
T |
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| Q |
154 |
atcaattcagggtataatgatttatgtttggattgattcacatgaaactgagttgaataataaatttgagcaataaaatctactaatcctatataatcaa |
253 |
Q |
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| T |
30010304 |
atcaatttagggtataatgatttatgtttggattgattcacatgaaactgagttgaataataaatttgagcaataaaatctactaatcctatataatcaa |
30010205 |
T |
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| Q |
254 |
tttctatagtcaaaatcaattctaatcgaaaactctcaaacat |
296 |
Q |
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| T |
30010204 |
tttctatagtcaaaatcaattctaatcgaaaactctcgaacat |
30010162 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 35
Target Start/End: Complemental strand, 30010457 - 30010423
Alignment:
| Q |
1 |
aaatgtaacaccccaaacacctgaaatttagaagc |
35 |
Q |
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| T |
30010457 |
aaatgtaacaccccaaacacctgaaatttagaagc |
30010423 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0361 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0361
Description:
Target: scaffold0361; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 171 - 223
Target Start/End: Original strand, 14091 - 14143
Alignment:
| Q |
171 |
tgatttatgtttggattgattcacatgaaactgagttgaataataaatttgag |
223 |
Q |
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| T |
14091 |
tgatttatgtttggatacattcatgtgaaagtgagttgaaaaataaatttgag |
14143 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 169 - 225
Target Start/End: Complemental strand, 28228961 - 28228905
Alignment:
| Q |
169 |
aatgatttatgtttggattgattcacatgaaactgagttgaataataaatttgagca |
225 |
Q |
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|||||||||||| ||||| | ||||||||||| | |||| || |||||||||||||| |
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| T |
28228961 |
aatgatttatgtgtggatagtttcacatgaaagttagttaaacaataaatttgagca |
28228905 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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