View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17407_low_17 (Length: 307)
Name: NF17407_low_17
Description: NF17407
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17407_low_17 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 277; Significance: 1e-155; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 277; E-Value: 1e-155
Query Start/End: Original strand, 9 - 293
Target Start/End: Complemental strand, 7036997 - 7036713
Alignment:
| Q |
9 |
aagaaatgagggtttttggcattggtacagtgttctatcaaatagatatggtgagaaagagatggggtgtttagagagggttggagaggcaattcggtat |
108 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7036997 |
aagaaatgagggtttttggcattggtacagtgttctatcaaatagatatggtgagaaagagatggggtgtttagagagggttggagaggcaattcggtat |
7036898 |
T |
|
| Q |
109 |
ggtggaacgatatatgcaatatatatacacgttcaggacacacgaaatatgtattcggtaaaagaaacgtataaaatgttgatggagggattgataagtg |
208 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7036897 |
ggtggaacgatatatgcaatatatatacacgttcaagacacacgaaatatgtattcggtaaaagaaacgtataaaatgttgatggagggattgataagtg |
7036798 |
T |
|
| Q |
209 |
ttcctaatcaatcatggtcgaaggcttggcataaatcaatcccgttaaaagttgcgtgcttagcttggagattatttcagaataa |
293 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
7036797 |
ttcctaatcaatcatggtcgaaggcttggcataaatcaatcccgttaaaagttgtgtgcttagcttggagattatttcagaataa |
7036713 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 222 - 292
Target Start/End: Original strand, 24828175 - 24828245
Alignment:
| Q |
222 |
atggtcgaaggcttggcataaatcaatcccgttaaaagttgcgtgcttagcttggagattatttcagaata |
292 |
Q |
| |
|
|||||| || |||||||||||||| |||||||||||||| | || |||| |||||||||||||| |||| |
|
|
| T |
24828175 |
atggtcaaaagcttggcataaatcggtcccgttaaaagtttcatgtttagtgtggagattatttcaaaata |
24828245 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 224 - 292
Target Start/End: Complemental strand, 27119125 - 27119057
Alignment:
| Q |
224 |
ggtcgaaggcttggcataaatcaatcccgttaaaagttgcgtgcttagcttggagattatttcagaata |
292 |
Q |
| |
|
||||||||||||| ||||||||| | |||||||||||| | ||||||| | ||| | ||||||| |||| |
|
|
| T |
27119125 |
ggtcgaaggcttgacataaatcagtgccgttaaaagtttcatgcttagttaggaaactatttcaaaata |
27119057 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 220 - 292
Target Start/End: Complemental strand, 18943316 - 18943244
Alignment:
| Q |
220 |
tcatggtcgaaggcttggcataaatcaatcccgttaaaagttgcgtgcttagcttggagattatttcagaata |
292 |
Q |
| |
|
|||||||||| ||||||||||||| || | |||| ||||||| |||| || ||||||||| | ||||| |||| |
|
|
| T |
18943316 |
tcatggtcgagggcttggcataaagcagttccgtcaaaagtttcgtgttttgcttggagagtgtttcaaaata |
18943244 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University