View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17407_low_19 (Length: 285)

Name: NF17407_low_19
Description: NF17407
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17407_low_19
NF17407_low_19
[»] chr3 (10 HSPs)
chr3 (59-241)||(9633133-9633315)
chr3 (9-266)||(28745178-28745433)
chr3 (73-266)||(2180130-2180328)
chr3 (147-248)||(2942990-2943091)
chr3 (145-199)||(1654845-1654899)
chr3 (59-213)||(16457059-16457220)
chr3 (145-195)||(2550439-2550489)
chr3 (145-195)||(7407531-7407581)
chr3 (145-195)||(13846265-13846315)
chr3 (147-266)||(1627724-1627843)
[»] chr2 (7 HSPs)
chr2 (9-217)||(22966969-22967180)
chr2 (145-215)||(15513919-15513989)
chr2 (158-203)||(44921412-44921457)
chr2 (193-249)||(27151061-27151117)
chr2 (195-266)||(24479356-24479427)
chr2 (158-249)||(30267223-30267314)
chr2 (145-181)||(31342509-31342545)
[»] chr8 (15 HSPs)
chr8 (112-266)||(12105563-12105717)
chr8 (59-249)||(29345651-29345843)
chr8 (145-249)||(25637863-25637967)
chr8 (145-249)||(5528963-5529067)
chr8 (145-249)||(19369686-19369790)
chr8 (145-249)||(19448668-19448772)
chr8 (145-249)||(19532304-19532408)
chr8 (39-266)||(5650605-5650840)
chr8 (40-212)||(6403846-6404025)
chr8 (145-199)||(25639076-25639130)
chr8 (145-199)||(28248857-28248911)
chr8 (145-195)||(45355889-45355939)
chr8 (145-205)||(27810161-27810221)
chr8 (158-203)||(18767184-18767229)
chr8 (109-213)||(31347889-31347995)
[»] chr7 (4 HSPs)
chr7 (59-249)||(20277045-20277238)
chr7 (145-249)||(9242260-9242364)
chr7 (145-199)||(4685180-4685234)
chr7 (40-213)||(2931721-2931901)
[»] chr4 (7 HSPs)
chr4 (43-256)||(39073937-39074157)
chr4 (108-212)||(27739517-27739618)
chr4 (149-249)||(1684732-1684832)
chr4 (145-195)||(43600540-43600590)
chr4 (193-249)||(37750818-37750874)
chr4 (158-249)||(47065823-47065914)
chr4 (9-43)||(39073825-39073859)
[»] chr6 (7 HSPs)
chr6 (147-249)||(12592053-12592155)
chr6 (145-249)||(6684320-6684424)
chr6 (145-199)||(15361984-15362038)
chr6 (145-199)||(16735074-16735128)
chr6 (152-212)||(10264017-10264077)
chr6 (145-249)||(14669119-14669226)
chr6 (149-249)||(17719502-17719603)
[»] scaffold0684 (1 HSPs)
scaffold0684 (145-247)||(523-625)
[»] scaffold0069 (1 HSPs)
scaffold0069 (145-249)||(40474-40578)
[»] chr5 (6 HSPs)
chr5 (145-249)||(23616590-23616694)
chr5 (145-249)||(23847987-23848091)
chr5 (147-196)||(7411607-7411656)
chr5 (148-249)||(17037762-17037862)
chr5 (145-199)||(5078841-5078895)
chr5 (193-249)||(38449803-38449859)
[»] chr1 (3 HSPs)
chr1 (109-248)||(897676-897815)
chr1 (145-238)||(51758982-51759074)
chr1 (193-249)||(47694717-47694773)
[»] scaffold0576 (1 HSPs)
scaffold0576 (145-199)||(6968-7022)


Alignment Details
Target: chr3 (Bit Score: 139; Significance: 9e-73; HSPs: 10)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 139; E-Value: 9e-73
Query Start/End: Original strand, 59 - 241
Target Start/End: Original strand, 9633133 - 9633315
Alignment:
Q  59 tgttgcatagttcgttttcattatgaaatcaaatttcaaacatttgtagcatatttggagttgtaaatttgaatgatgtttgatcttctaatattggtga 158  Q
    |||||||| |||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  9633133 tgttgcattgttcgtttccattatgaaatcaaatttcaaacatttgtaacatatttggagttgtaaatttgaatgatatttgatcttctaatattggtga 9633232  T
Q  159 attcaaatatgagtgaagtctaaggaaagacaaatttggtagattcacaattttttattctatacaattttacgacacttttc 241  Q
    |||||||||||| |||||||||| ||||||   ||||||||||||||||||||||||||||| |||||||| |||||||||||    
T  9633233 attcaaatatgaatgaagtctaaagaaagaattatttggtagattcacaattttttattctagacaattttgcgacacttttc 9633315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 9 - 266
Target Start/End: Complemental strand, 28745433 - 28745178
Alignment:
Q  9 aaaattagtggggttatagatgtgcactacttagtatgtaattgtcattatgttgcatagttcgttttcattatgaaatcaaatttcaaacatttgtagc 108  Q
    |||||||||||||| |||||||||||||| ||||||||||||||   || ||||||||   || ||| ||||||||||| |  |||||||| |||||| |    
T  28745433 aaaattagtggggtcatagatgtgcactatttagtatgtaattgaagttgtgttgcat---tcatttccattatgaaataacgtttcaaacgtttgtaac 28745337  T
Q  109 atatttggagttgtaaatttgaatgatgtttgatcttctaatattggtgaattcaaatatg-agtgaagtctaaggaaagacaaatttggtagattcaca 207  Q
    ||| || ||||| ||||||||||||| ||| |||||| |||||||||| |||| ||||||| | |||| || || |||||||||||||||| ||||||||    
T  28745336 ataatttgagttttaaatttgaatgaggttagatcttttaatattggttaatttaaatatgaaatgaaatcaaaagaaagacaaatttggttgattcaca 28745237  T
Q  208 attttttattctatacaattttacgacacttttcacaacttcaagaaaatgatgaatgt 266  Q
    | |||||||  || |||||||| | |||||||| |||| |||   |||||||| |||||    
T  28745236 actttttatgttagacaattttgcaacactttttacaaattctcaaaaatgataaatgt 28745178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 73 - 266
Target Start/End: Complemental strand, 2180328 - 2180130
Alignment:
Q  73 ttttcattatgaaatcaaatttcaaacatttgtag-----catatttggagttgtaaatttgaatgatgtttgatcttctaatattggtgaattcaaata 167  Q
    ||||||||||||||| ||||||||||  ||||||      |||||||||||||| |||| ||||||| |||| |||||||||||||||| ||||||||||    
T  2180328 ttttcattatgaaataaaatttcaaatgtttgtatgagaacatatttggagttgcaaatctgaatgaagtttaatcttctaatattggttaattcaaata 2180229  T
Q  168 tgagtgaagtctaaggaaagacaaatttggtagattcacaattttttattctatacaattttacgacacttttcacaacttcaagaaaatgatgaatgt 266  Q
    |||  ||| |||||| ||| | |||||||||| ||||||||||||||| ||||  |||||||  ||||||||| |||||||| | ||||| || |||||    
T  2180228 tgaacgaactctaagcaaacataaatttggtaaattcacaattttttaatctaggcaattttctgacactttttacaacttccaaaaaattataaatgt 2180130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 147 - 248
Target Start/End: Original strand, 2942990 - 2943091
Alignment:
Q  147 taatattggtgaattcaaatatgagtgaagtctaaggaaagacaaatttggtagattcacaattttttattctatacaattttacgacacttttcacaac 246  Q
    |||||||||| ||||||||||||| ||||||||||| |||||||||||||||||||||| ||   |||| |||| |||||||| |||||||||| |||||    
T  2942990 taatattggttaattcaaatatgaatgaagtctaagcaaagacaaatttggtagattcaaaaaaatttagtctagacaattttgcgacactttttacaac 2943089  T
Q  247 tt 248  Q
    ||    
T  2943090 tt 2943091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 145 - 199
Target Start/End: Complemental strand, 1654899 - 1654845
Alignment:
Q  145 tctaatattggtgaattcaaatatgagtgaagtctaaggaaagacaaatttggta 199  Q
    |||||||||||| ||||||||||||| ||||||||||| ||||||||||||||||    
T  1654899 tctaatattggttaattcaaatatgaatgaagtctaagcaaagacaaatttggta 1654845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 59 - 213
Target Start/End: Original strand, 16457059 - 16457220
Alignment:
Q  59 tgttgcatagttcgttttcattatgaaatcaaatttcaaacatttgtagc-----atatttggagttgtaaatttgaatgatgtttgatcttctaatatt 153  Q
    ||||||||| ||| ||| ||||||||||||||||||||||  ||||||       |||||||||||||||||| | |||||  ||| |||||| ||||||    
T  16457059 tgttgcatacttcatttccattatgaaatcaaatttcaaatgtttgtatggggaaatatttggagttgtaaatctaaatgaatttt-atcttcaaatatt 16457157  T
Q  154 ggtg---aattcaaatatgagtgaagtctaaggaaagacaaatttggtagattcacaattttt 213  Q
    | ||   |||| |||||||| ||||||  ||| |||||||||||||| |||||| ||||||||    
T  16457158 gttggttaatttaaatatgaatgaagtgaaagcaaagacaaatttggcagattctcaattttt 16457220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 145 - 195
Target Start/End: Complemental strand, 2550489 - 2550439
Alignment:
Q  145 tctaatattggtgaattcaaatatgagtgaagtctaaggaaagacaaattt 195  Q
    |||||||||||| ||||||||||||| ||||||||||| ||||||||||||    
T  2550489 tctaatattggttaattcaaatatgaatgaagtctaagcaaagacaaattt 2550439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 145 - 195
Target Start/End: Original strand, 7407531 - 7407581
Alignment:
Q  145 tctaatattggtgaattcaaatatgagtgaagtctaaggaaagacaaattt 195  Q
    |||||||||||| ||||||||||||| ||||||||||| ||||||||||||    
T  7407531 tctaatattggttaattcaaatatgaatgaagtctaagcaaagacaaattt 7407581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 145 - 195
Target Start/End: Complemental strand, 13846315 - 13846265
Alignment:
Q  145 tctaatattggtgaattcaaatatgagtgaagtctaaggaaagacaaattt 195  Q
    |||||||||||| ||||||||||||| ||||||||||| ||||||||||||    
T  13846315 tctaatattggttaattcaaatatgaatgaagtctaagcaaagacaaattt 13846265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 147 - 266
Target Start/End: Original strand, 1627724 - 1627843
Alignment:
Q  147 taatattggtgaattcaaatatgagtgaagtctaaggaaagacaaatttggtagattcacaattttttattctatacaattttacgacacttttcacaac 246  Q
    |||||||| | ||||||||||||| ||||||||||| ||||| ||| ||| |||||| | ||   |||| | || | |||||| |||||||||| |||||    
T  1627724 taatattgattaattcaaatatgaatgaagtctaagtaaagataaacttgttagatttaaaaaaatttagtttagataattttgcgacactttttacaac 1627823  T
Q  247 ttcaagaaaatgatgaatgt 266  Q
    ||| | ||||| || |||||    
T  1627824 ttctaaaaaattataaatgt 1627843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 138; Significance: 3e-72; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 9 - 217
Target Start/End: Complemental strand, 22967180 - 22966969
Alignment:
Q  9 aaaattagtggggttatagatgtgcactacttagtatgtaattgtcattat---gttgcatagttcgttttcattatgaaatcaaatttcaaacatttgt 105  Q
    |||||||||||||  |||||| |||||||||||||||||||||||  || |   ||||||| |||||||| |||||||||||||||||||||||||||||    
T  22967180 aaaattagtggggcaatagatatgcactacttagtatgtaattgtagttgttgtgttgcattgttcgtttccattatgaaatcaaatttcaaacatttgt 22967081  T
Q  106 agcatatttggagttgtaaatttgaatgatgtttgatcttctaatattggtgaattcaaatatgagtgaagtctaaggaaagacaaatttggtagattca 205  Q
    | |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||| ||||||   ||||||||||||||    
T  22967080 aacatatttggagttgtaaatttgaatgatatttgatcttctaatattggtgaattcaaatatgaatgaagtctaaagaaagaattatttggtagattca 22966981  T
Q  206 caattttttatt 217  Q
    ||||||||||||    
T  22966980 caattttttatt 22966969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 145 - 215
Target Start/End: Complemental strand, 15513989 - 15513919
Alignment:
Q  145 tctaatattggtgaattcaaatatgagtgaagtctaaggaaagacaaatttggtagattcacaatttttta 215  Q
    |||||||||||| ||||||||||||| ||||||||||| ||||||||||||| |||||||| |||||||||    
T  15513989 tctaatattggttaattcaaatatgaatgaagtctaagcaaagacaaatttgatagattcaaaatttttta 15513919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 158 - 203
Target Start/End: Complemental strand, 44921457 - 44921412
Alignment:
Q  158 aattcaaatatgagtgaagtctaaggaaagacaaatttggtagatt 203  Q
    ||||||||||||| ||||||||||| ||||||||||||| ||||||    
T  44921457 aattcaaatatgaatgaagtctaagcaaagacaaatttgatagatt 44921412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 193 - 249
Target Start/End: Original strand, 27151061 - 27151117
Alignment:
Q  193 tttggtagattcacaattttttattctatacaattttacgacacttttcacaacttc 249  Q
    ||||||||||||||||||||||| |||  | |||||| |||||||||| ||||||||    
T  27151061 tttggtagattcacaattttttagtctggataattttgcgacactttttacaacttc 27151117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 195 - 266
Target Start/End: Complemental strand, 24479427 - 24479356
Alignment:
Q  195 tggtagattcacaattttttattctatacaattttacgacacttttcacaacttcaagaaaatgatgaatgt 266  Q
    |||||||||||||||||||||  |||||||||||| | ||| | || |||||||||  |||||||| |||||    
T  24479427 tggtagattcacaattttttagcctatacaattttgcaacattgtttacaacttcataaaaatgataaatgt 24479356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 158 - 249
Target Start/End: Complemental strand, 30267314 - 30267223
Alignment:
Q  158 aattcaaatatgagtgaagtctaaggaaagacaaatttggtagattcacaattttttattctatacaattttacgacacttttcacaacttc 249  Q
    ||||||||||||| ||||||||||| ||||| || ||| ||||||| | ||  || || |||| |||||||| | |||||||| ||||||||    
T  30267314 aattcaaatatgaatgaagtctaagcaaagaaaatttttgtagattaaaaaaattatagtctaaacaattttgccacactttttacaacttc 30267223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 145 - 181
Target Start/End: Original strand, 31342509 - 31342545
Alignment:
Q  145 tctaatattggtgaattcaaatatgagtgaagtctaa 181  Q
    |||||||||||| ||||||||||||| ||||||||||    
T  31342509 tctaatattggttaattcaaatatgaatgaagtctaa 31342545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 83; Significance: 2e-39; HSPs: 15)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 112 - 266
Target Start/End: Complemental strand, 12105717 - 12105563
Alignment:
Q  112 tttggagttgtaaatttgaatgatgtttgatcttctaatattggtgaattcaaatatgagtgaagtctaaggaaagacaaatttggtagattcacaattt 211  Q
    |||| ||||||||||||||||||  || |||||||| |||||||| ||||||||||||| |||| |||||| ||| ||||||||||||||||||||||||    
T  12105717 tttgaagttgtaaatttgaatgactttcgatcttctcatattggttaattcaaatatgaatgaaatctaagcaaaaacaaatttggtagattcacaattt 12105618  T
Q  212 tttattctatacaattttacgacacttttcacaacttcaagaaaatgatgaatgt 266  Q
    |||  | || |||||||| |||||||||| |||||||| | ||||||||||||||    
T  12105617 tttggtttagacaattttgcgacactttttacaacttctaaaaaatgatgaatgt 12105563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 59 - 249
Target Start/End: Complemental strand, 29345843 - 29345651
Alignment:
Q  59 tgttgcatagttcgttttcattatgaaatcaaatttcaaacatttgtag-----catatttggagttgtaaatttgaatgatgtttgatcttctaatatt 153  Q
    ||||||||||||| ||| ||||||||||||||||||||||  ||||||      ||||||| |||||| |||| | ||| | |||||||||   ||||||    
T  29345843 tgttgcatagttcatttccattatgaaatcaaatttcaaatgtttgtatgagaacatatttagagttgcaaatctaaataaagtttgatct---aatatt 29345747  T
Q  154 ggtgaattcaaatatgagtgaagtctaaggaaagacaaatttggtagattcacaattttttattctatacaattttacgacacttttcacaacttc 249  Q
    ||| ||||||||||||| ||||||||||| | |||||||||| ||||||||||||||||||| | || |||||||| |||||||||| ||||||||    
T  29345746 ggttaattcaaatatgattgaagtctaagcagagacaaatttagtagattcacaattttttagtttagacaattttgcgacactttttacaacttc 29345651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 145 - 249
Target Start/End: Complemental strand, 25637967 - 25637863
Alignment:
Q  145 tctaatattggtgaattcaaatatgagtgaagtctaaggaaagacaaatttggtagattcacaattttttattctatacaattttacgacacttttcaca 244  Q
    |||||||||||| ||||||||||||| ||||||||| | |||||||||||| ||||||||| ||  ||||| |||| |||||||| |||||||||| |||    
T  25637967 tctaatattggttaattcaaatatgaatgaagtctatgtaaagacaaattttgtagattcaaaaaattttagtctagacaattttgcgacactttttaca 25637868  T
Q  245 acttc 249  Q
    |||||    
T  25637867 acttc 25637863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 145 - 249
Target Start/End: Complemental strand, 5529067 - 5528963
Alignment:
Q  145 tctaatattggtgaattcaaatatgagtgaagtctaaggaaagacaaatttggtagattcacaattttttattctatacaattttacgacacttttcaca 244  Q
    |||||||||||| ||||||||||||| ||||||||||  ||||||||||||| |||||||| ||   |||| |||| |||||||| |||||||||| |||    
T  5529067 tctaatattggttaattcaaatatgaatgaagtctaatcaaagacaaatttgatagattcaaaaaaatttagtctagacaattttgcgacactttttaca 5528968  T
Q  245 acttc 249  Q
    |||||    
T  5528967 acttc 5528963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 145 - 249
Target Start/End: Original strand, 19369686 - 19369790
Alignment:
Q  145 tctaatattggtgaattcaaatatgagtgaagtctaaggaaagacaaatttggtagattcacaattttttattctatacaattttacgacacttttcaca 244  Q
    ||||||||| || ||||||||||||| |||||| |||| |||||||||||||||||||||| ||   |||| |||| |||||||| |||||||||| |||    
T  19369686 tctaatattagttaattcaaatatgaatgaagtttaagcaaagacaaatttggtagattcaaaaaaatttagtctagacaattttgcgacactttttaca 19369785  T
Q  245 acttc 249  Q
    |||||    
T  19369786 acttc 19369790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 145 - 249
Target Start/End: Complemental strand, 19448772 - 19448668
Alignment:
Q  145 tctaatattggtgaattcaaatatgagtgaagtctaaggaaagacaaatttggtagattcacaattttttattctatacaattttacgacacttttcaca 244  Q
    |||||||||||| ||||||||||||| |||||| ||||  ||||||||||||||||||||| ||   |||| |||| |||||||| |||||||||| |||    
T  19448772 tctaatattggttaattcaaatatgaatgaagtttaagtgaagacaaatttggtagattcaaaaaaatttagtctagacaattttgcgacactttttaca 19448673  T
Q  245 acttc 249  Q
    |||||    
T  19448672 acttc 19448668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 145 - 249
Target Start/End: Original strand, 19532304 - 19532408
Alignment:
Q  145 tctaatattggtgaattcaaatatgagtgaagtctaaggaaagacaaatttggtagattcacaattttttattctatacaattttacgacacttttcaca 244  Q
    |||||||||||| ||||||||||||| |||||| ||||  ||||||||||||||||||||| ||   |||| |||| |||||||| |||||||||| |||    
T  19532304 tctaatattggttaattcaaatatgaatgaagtttaagtgaagacaaatttggtagattcaaaaaaatttagtctagacaattttgcgacactttttaca 19532403  T
Q  245 acttc 249  Q
    |||||    
T  19532404 acttc 19532408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 39 - 266
Target Start/End: Original strand, 5650605 - 5650840
Alignment:
Q  39 ttagtatgtaattgtcattatgttgcatagttcgttttcattatgaaatcaaatttcaaacatttgtag-----catatttg-----gagttgtaaattt 128  Q
    ||||||||||||||   || ||||||||||||||||||  || |||||||||||||||||| ||| ||      |||||||      |||||| ||| ||    
T  5650605 ttagtatgtaattgaagttgtgttgcatagttcgttttatttttgaaatcaaatttcaaacgtttatatgagaacatatttacttttgagttgcaaaatt 5650704  T
Q  129 gaatgatgtttgatcttctaatattggtgaattcaaatatgagtgaagtctaaggaaagacaaatttggtagattcacaattttttattctatacaattt 228  Q
    |||||| ||| |||||||| |||||||| ||||||||||||| |||| |||||| || |||||||  |||| ||| ||||  ||||| || | || ||||    
T  5650705 gaatgacgttcgatcttctcatattggttaattcaaatatgaatgaaatctaagcaatgacaaatcgggtaaattaacaa--ttttagtccaaacgattt 5650802  T
Q  229 tacgacacttttcacaacttcaagaaaatgatgaatgt 266  Q
    | |||||||| | ||||||||   ||||||||||||||    
T  5650803 tgcgacacttattacaacttctcaaaaatgatgaatgt 5650840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 40 - 212
Target Start/End: Complemental strand, 6404025 - 6403846
Alignment:
Q  40 tagtatgtaattgtcattatgttgcatagttcgttttcattatgaaatcaaatttcaaacatttgta-----gcatatttggagttgtaaatttgaatga 134  Q
    |||||||||||||  ||| ||||||||| ||| ||| ||||||||||||||||||||||  ||||||       |||||||||||||||||||||||| |    
T  6404025 tagtatgtaattgaaattgtgttgcatacttcatttccattatgaaatcaaatttcaaatgtttgtatggggaaatatttggagttgtaaatttgaatta 6403926  T
Q  135 tgtttgatcttctaatattggtg---aattcaaatatgagtgaagtctaaggaaagacaaatttggtagattcacaatttt 212  Q
     |||| |||||  ||||||| ||   |||| |||||||| ||||||  ||| |||| |||||| | ||||||| |||||||    
T  6403925 agttt-atctttaaatattgttggctaatttaaatatgaatgaagtgaaagcaaaggcaaattcgatagattctcaatttt 6403846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 145 - 199
Target Start/End: Complemental strand, 25639130 - 25639076
Alignment:
Q  145 tctaatattggtgaattcaaatatgagtgaagtctaaggaaagacaaatttggta 199  Q
    |||||||||||| ||||||||||||| ||||||||||| ||||||||||||||||    
T  25639130 tctaatattggttaattcaaatatgaatgaagtctaagcaaagacaaatttggta 25639076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 145 - 199
Target Start/End: Original strand, 28248857 - 28248911
Alignment:
Q  145 tctaatattggtgaattcaaatatgagtgaagtctaaggaaagacaaatttggta 199  Q
    |||||||||||| ||||||||||||| ||||||||||| ||||||||||||||||    
T  28248857 tctaatattggttaattcaaatatgaatgaagtctaagcaaagacaaatttggta 28248911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 145 - 195
Target Start/End: Original strand, 45355889 - 45355939
Alignment:
Q  145 tctaatattggtgaattcaaatatgagtgaagtctaaggaaagacaaattt 195  Q
    |||||||||||| ||||||||||||| ||||||||||| ||||||||||||    
T  45355889 tctaatattggttaattcaaatatgaatgaagtctaagcaaagacaaattt 45355939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 145 - 205
Target Start/End: Complemental strand, 27810221 - 27810161
Alignment:
Q  145 tctaatattggtgaattcaaatatgagtgaagtctaaggaaagacaaatttggtagattca 205  Q
    ||||| |||||| ||||||||||||| ||||||||||  |||||||||||| |||||||||    
T  27810221 tctaaaattggttaattcaaatatgaatgaagtctaaacaaagacaaattttgtagattca 27810161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 158 - 203
Target Start/End: Complemental strand, 18767229 - 18767184
Alignment:
Q  158 aattcaaatatgagtgaagtctaaggaaagacaaatttggtagatt 203  Q
    ||||||||||||| |||||| ||||  |||||||||||||||||||    
T  18767229 aattcaaatatgaatgaagtttaagcgaagacaaatttggtagatt 18767184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 109 - 213
Target Start/End: Complemental strand, 31347995 - 31347889
Alignment:
Q  109 atatttggagttgtaaatttgaatgatgtttgatcttctaata---ttggtgaattcaaatatgagtgaagtctaaggaaagacaaatttggtagattca 205  Q
    |||||||||||||||||| |||||||  ||| |||||| ||||   ||||| |||| ||||| || ||||||  ||| |||| ||||| ||||||||||     
T  31347995 atatttggagttgtaaatctgaatgaaattt-atcttcaaatattgttggttaatttaaatacgaatgaagtgaaagcaaaggcaaatgtggtagattct 31347897  T
Q  206 caattttt 213  Q
    ||||||||    
T  31347896 caattttt 31347889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 71; Significance: 3e-32; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 59 - 249
Target Start/End: Original strand, 20277045 - 20277238
Alignment:
Q  59 tgttgcatagttcgttttcattatgaaatcaaatttcaaacatttgtag-----catatttggagttgtaaatttgaatgatgtttgatcttctaatatt 153  Q
    ||||||||||||| ||| ||||||||||||||||||||||  ||||||      |||||||||||||| |||| | |||||||||| ||||   ||||||    
T  20277045 tgttgcatagttcatttccattatgaaatcaaatttcaaatgtttgtatgagaacatatttggagttgcaaatctaaatgatgttttatct---aatatt 20277141  T
Q  154 ggtgaattcaaatatgagtgaagtctaaggaaagacaaatttggtagattcaca-attttttattctatacaattttacgacacttttcacaacttc 249  Q
    ||| ||||||||||||| ||||||||||  |||||||||||| || |||||| |  ||||||| | || ||||||||||||||||||| ||||||||    
T  20277142 ggttaattcaaatatgactgaagtctaaacaaagacaaatttagttgattcatattttttttagtttagacaattttacgacactttttacaacttc 20277238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 145 - 249
Target Start/End: Original strand, 9242260 - 9242364
Alignment:
Q  145 tctaatattggtgaattcaaatatgagtgaagtctaaggaaagacaaatttggtagattcacaattttttattctatacaattttacgacacttttcaca 244  Q
    |||||||||||| ||||||||||||| |||||| ||||  ||||||||||||||||||||| ||   |||| |||| |||||||| |||||||||| |||    
T  9242260 tctaatattggttaattcaaatatgaatgaagtttaagcgaagacaaatttggtagattcaaaaaaatttaatctagacaattttgcgacactttttaca 9242359  T
Q  245 acttc 249  Q
    |||||    
T  9242360 acttc 9242364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 145 - 199
Target Start/End: Original strand, 4685180 - 4685234
Alignment:
Q  145 tctaatattggtgaattcaaatatgagtgaagtctaaggaaagacaaatttggta 199  Q
    |||||||||||| ||||||||||||| ||||||||||| ||||||||||||||||    
T  4685180 tctaatattggttaattcaaatatgaatgaagtctaagcaaagacaaatttggta 4685234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 40 - 213
Target Start/End: Original strand, 2931721 - 2931901
Alignment:
Q  40 tagtatgtaattgtcattatgttgcatagttcgttttcattatgaaatcaaatttcaaacatttgtagca-----tatttggagttgtaaatttgaatga 134  Q
    |||||||||||||  ||| ||||||||| ||| ||| |||||||||||||||||  |||  ||||||  |     ||||| ||||||||||| ||||| |    
T  2931721 tagtatgtaattgaaattgtgttgcatacttcatttccattatgaaatcaaattataaatgtttgtatgagaaaatatttagagttgtaaatctgaatta 2931820  T
Q  135 tgtttgatcttctaatattggtg---aattcaaatatgagtgaagtctaaggaaagacaaatttggtagattcacaattttt 213  Q
     |||| |||||| ||||||| ||   | || |||||||| ||||||||||  |||| |||||||| ||||||||||||||||    
T  2931821 agttt-atcttcaaatattgttggttagttgaaatatgaatgaagtctaatcaaaggcaaatttgatagattcacaattttt 2931901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 61; Significance: 3e-26; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 43 - 256
Target Start/End: Original strand, 39073937 - 39074157
Alignment:
Q  43 tatgtaattgtcattatgttgcatagttcgttttcattatgaaatcaaatttcaaacatttgtag-----catatttggagttgtaaatttgaatgatgt 137  Q
    ||||||||||  ||| ||||||||||||| ||| || ||||||||||||||||||| |||||||      ||||||||||||||  |||  ||||||  |    
T  39073937 tatgtaattgaaattgtgttgcatagttcatttccaatatgaaatcaaatttcaaatatttgtatgataacatatttggagttgccaatccgaatgaatt 39074036  T
Q  138 ttga-tcttctaatattggtgaattca-aatatgagtgaagtctaaggaaagacaaatttggtagattcacaattttttattctatacaattttacgaca 235  Q
    || | ||||||||||||||| |||||| ||| |    |||||||||| |||||||||||| |||||||||||||| |||| |||| |||||||| | |||    
T  39074037 tttagtcttctaatattggtcaattcacaattttttagaagtctaagcaaagacaaatttagtagattcacaattatttagtctagacaattttgcaaca 39074136  T
Q  236 cttttcacaacttcaagaaaa 256  Q
     |||| |||||||| ||||||    
T  39074137 ttttttacaacttctagaaaa 39074157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 108 - 212
Target Start/End: Original strand, 27739517 - 27739618
Alignment:
Q  108 catatttggagttgtaaatttgaatgatgtttgatcttctaatattggtgaattcaaatatgagtgaagtctaaggaaagacaaatttggtagattcaca 207  Q
    |||||||||||||| |||| | ||||| ||||||||    ||||||||| ||||||| ||||| ||||||||||| ||||||||||| ||||||||||||    
T  27739517 catatttggagttgcaaatataaatgaagtttgatcc---aatattggttaattcaattatgactgaagtctaagcaaagacaaattcggtagattcaca 27739613  T
Q  208 atttt 212  Q
    |||||    
T  27739614 atttt 27739618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 149 - 249
Target Start/End: Original strand, 1684732 - 1684832
Alignment:
Q  149 atattggtgaattcaaatatgagtgaagtctaaggaaagacaaatttggtagattcacaattttttattctatacaattttacgacacttttcacaactt 248  Q
    |||||||| ||||||||| ||| |||||| ||||  ||||||||||||||||||||| ||   |||| |||| |||||||| |||||||||| |||||||    
T  1684732 atattggttaattcaaatctgaatgaagtttaagcgaagacaaatttggtagattcaaaaaaatttagtctagacaattttgcgacactttttacaactt 1684831  T
Q  249 c 249  Q
    |    
T  1684832 c 1684832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 145 - 195
Target Start/End: Complemental strand, 43600590 - 43600540
Alignment:
Q  145 tctaatattggtgaattcaaatatgagtgaagtctaaggaaagacaaattt 195  Q
    |||||||||||| ||||||||||||| ||||||||||| ||||||||||||    
T  43600590 tctaatattggttaattcaaatatgaatgaagtctaagcaaagacaaattt 43600540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 193 - 249
Target Start/End: Original strand, 37750818 - 37750874
Alignment:
Q  193 tttggtagattcacaattttttattctatacaattttacgacacttttcacaacttc 249  Q
    ||||||||||| ||||||||||| ||||||||||||| ||| |||||| ||||||||    
T  37750818 tttggtagatttacaattttttagtctatacaattttgcgatactttttacaacttc 37750874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 158 - 249
Target Start/End: Original strand, 47065823 - 47065914
Alignment:
Q  158 aattcaaatatgagtgaagtctaaggaaagacaaatttggtagattcacaattttttattctatacaattttacgacacttttcacaacttc 249  Q
    ||||||||||||| ||||||||||| ||||| || ||| ||||||| | ||  || || |||| |||||||| | |||||||| ||||||||    
T  47065823 aattcaaatatgaatgaagtctaagcaaagaaaatttttgtagattaaaaaaattatagtctaaacaattttgccacactttttacaacttc 47065914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 9 - 43
Target Start/End: Original strand, 39073825 - 39073859
Alignment:
Q  9 aaaattagtggggttatagatgtgcactacttagt 43  Q
    |||| ||||||||||||||||||||||||||||||    
T  39073825 aaaactagtggggttatagatgtgcactacttagt 39073859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 59; Significance: 5e-25; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 147 - 249
Target Start/End: Complemental strand, 12592155 - 12592053
Alignment:
Q  147 taatattggtgaattcaaatatgagtgaagtctaaggaaagacaaatttggtagattcacaattttttattctatacaattttacgacacttttcacaac 246  Q
    |||||||||| |||||||||||||  |||||||||| ||||||||||||||||||| || | |||||||||||| |||| ||| |||||||||| |||||    
T  12592155 taatattggttaattcaaatatgaaggaagtctaagcaaagacaaatttggtagatccaaatttttttattctagacaaatttgcgacactttttacaac 12592056  T
Q  247 ttc 249  Q
    |||    
T  12592055 ttc 12592053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 145 - 249
Target Start/End: Complemental strand, 6684424 - 6684320
Alignment:
Q  145 tctaatattggtgaattcaaatatgagtgaagtctaaggaaagacaaatttggtagattcacaattttttattctatacaattttacgacacttttcaca 244  Q
    |||||||||||| ||||||||||||| ||||||||||| ||||| ||||||||||||||||  |   |||| | || |||||||| |||||||||| |||    
T  6684424 tctaatattggttaattcaaatatgaatgaagtctaagtaaagaaaaatttggtagattcaagaaactttagtttagacaattttgcgacactttttaca 6684325  T
Q  245 acttc 249  Q
    |||||    
T  6684324 acttc 6684320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 145 - 199
Target Start/End: Complemental strand, 15362038 - 15361984
Alignment:
Q  145 tctaatattggtgaattcaaatatgagtgaagtctaaggaaagacaaatttggta 199  Q
    |||||||||||| ||||||||||||| ||||||||||| ||||||||||||||||    
T  15362038 tctaatattggttaattcaaatatgaatgaagtctaagcaaagacaaatttggta 15361984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 145 - 199
Target Start/End: Complemental strand, 16735128 - 16735074
Alignment:
Q  145 tctaatattggtgaattcaaatatgagtgaagtctaaggaaagacaaatttggta 199  Q
    |||||||||||| ||||||||||||| ||||||||||| ||||||||||||||||    
T  16735128 tctaatattggttaattcaaatatgaatgaagtctaagcaaagacaaatttggta 16735074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 152 - 212
Target Start/End: Complemental strand, 10264077 - 10264017
Alignment:
Q  152 ttggtgaattcaaatatgagtgaagtctaaggaaagacaaatttggtagattcacaatttt 212  Q
    ||||| |||| |||||| | ||||||||||| ||||||||||||| |||||||||||||||    
T  10264077 ttggttaattgaaatattattgaagtctaagcaaagacaaatttgatagattcacaatttt 10264017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 145 - 249
Target Start/End: Original strand, 14669119 - 14669226
Alignment:
Q  145 tctaatattggtgaattcaaatatgagtgaagtc---taaggaaagacaaatttggtagattcacaattttttattctatacaattttacgacacttttc 241  Q
    |||||||||||| ||||||||||||| ||||||    ||||  |||| |||||||||||||||| ||   |||| |||| | |||||| ||||||||||     
T  14669119 tctaatattggttaattcaaatatgaatgaagtaatttaagcgaagataaatttggtagattcaaaaaaatttagtctagataattttgcgacacttttt 14669218  T
Q  242 acaacttc 249  Q
    || |||||    
T  14669219 acgacttc 14669226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 149 - 249
Target Start/End: Original strand, 17719502 - 17719603
Alignment:
Q  149 atattggtgaattcaaatatgagtgaagtctaaggaaagacaaatttggtagattc-acaattttttattctatacaattttacgacacttttcacaact 247  Q
    |||||||| ||||| ||| ||| |||||| ||||  ||||||||||||| |||||| | ||  ||||| | || |||||||| |||||||||| ||||||    
T  17719502 atattggttaattctaatctgaatgaagtttaagtgaagacaaatttgggagattcaaaaaaattttagtttagacaattttgcgacactttttacaact 17719601  T
Q  248 tc 249  Q
    ||    
T  17719602 tc 17719603  T

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Target: scaffold0684 (Bit Score: 51; Significance: 3e-20; HSPs: 1)
Name: scaffold0684
Description:

Target: scaffold0684; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 145 - 247
Target Start/End: Original strand, 523 - 625
Alignment:
Q  145 tctaatattggtgaattcaaatatgagtgaagtctaaggaaagacaaatttggtagattcacaattttttattctatacaattttacgacacttttcaca 244  Q
    |||||||||||| ||||||||||||| |||||| ||||  ||||||||||||||||||||| ||   |||| |||| |||||||| |||||||||| |||    
T  523 tctaatattggttaattcaaatatgaatgaagtttaagcgaagacaaatttggtagattcaaaaaaatttaatctagacaattttgcgacactttttaca 622  T
Q  245 act 247  Q
    |||    
T  623 act 625  T

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Target: scaffold0069 (Bit Score: 49; Significance: 4e-19; HSPs: 1)
Name: scaffold0069
Description:

Target: scaffold0069; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 145 - 249
Target Start/End: Original strand, 40474 - 40578
Alignment:
Q  145 tctaatattggtgaattcaaatatgagtgaagtctaaggaaagacaaatttggtagattcacaattttttattctatacaattttacgacacttttcaca 244  Q
    |||||||||||| ||||||||||||| |||||| ||||  ||||||||||||||||||||| ||   |||| |||| ||||||||  ||||||||| |||    
T  40474 tctaatattggttaattcaaatatgaatgaagtttaagcgaagacaaatttggtagattcaaaaaaatttaatctagacaattttgggacactttttaca 40573  T
Q  245 acttc 249  Q
    |||||    
T  40574 acttc 40578  T

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Target: chr5 (Bit Score: 49; Significance: 4e-19; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 145 - 249
Target Start/End: Original strand, 23616590 - 23616694
Alignment:
Q  145 tctaatattggtgaattcaaatatgagtgaagtctaaggaaagacaaatttggtagattcacaattttttattctatacaattttacgacacttttcaca 244  Q
    |||||||||||| ||||||||||||| |||||| ||||  ||||||||||||||||||||| ||   ||||  ||| |||||||| |||||||||| |||    
T  23616590 tctaatattggttaattcaaatatgaatgaagtttaagtgaagacaaatttggtagattcaaaaaaatttagcctagacaattttgcgacactttttaca 23616689  T
Q  245 acttc 249  Q
    |||||    
T  23616690 acttc 23616694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 145 - 249
Target Start/End: Original strand, 23847987 - 23848091
Alignment:
Q  145 tctaatattggtgaattcaaatatgagtgaagtctaaggaaagacaaatttggtagattcacaattttttattctatacaattttacgacacttttcaca 244  Q
    |||||||||||| ||||||||||||| |||||| ||||  ||||||||||||||||||||| ||   ||||  ||| |||||||| |||||||||| |||    
T  23847987 tctaatattggttaattcaaatatgaatgaagtttaagtgaagacaaatttggtagattcaaaaaaatttagcctagacaattttgcgacactttttaca 23848086  T
Q  245 acttc 249  Q
    |||||    
T  23848087 acttc 23848091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 147 - 196
Target Start/End: Complemental strand, 7411656 - 7411607
Alignment:
Q  147 taatattggtgaattcaaatatgagtgaagtctaaggaaagacaaatttg 196  Q
    |||||||||| ||||||||||||| ||||||||||| |||||||||||||    
T  7411656 taatattggttaattcaaatatgaatgaagtctaagcaaagacaaatttg 7411607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 148 - 249
Target Start/End: Complemental strand, 17037862 - 17037762
Alignment:
Q  148 aatattggtgaattcaaatatgagtgaagtctaaggaaagacaaatttggtagattcacaattttttattctatacaattttacgacacttttcacaact 247  Q
    ||||||||| ||||||||||||| | |||| |||| |||||||||||||||||||| | ||   | || ||||||||||||| ||||||||||  |||||    
T  17037862 aatattggttaattcaaatatgaat-aagtttaagtaaagacaaatttggtagattaaaaaaaatctagtctatacaattttgcgacacttttgtcaact 17037764  T
Q  248 tc 249  Q
    ||    
T  17037763 tc 17037762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 145 - 199
Target Start/End: Original strand, 5078841 - 5078895
Alignment:
Q  145 tctaatattggtgaattcaaatatgagtgaagtctaaggaaagacaaatttggta 199  Q
    |||||||||||| ||||||||||||| |||| | |||| ||||||||||||||||    
T  5078841 tctaatattggttaattcaaatatgaatgaaatttaagcaaagacaaatttggta 5078895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 193 - 249
Target Start/End: Original strand, 38449803 - 38449859
Alignment:
Q  193 tttggtagattcacaattttttattctatacaattttacgacacttttcacaacttc 249  Q
    ||||||||||||||||| |||||  ||  |||||||| |||||||||| ||||||||    
T  38449803 tttggtagattcacaatcttttagcctggacaattttgcgacactttttacaacttc 38449859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 44; Significance: 4e-16; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 109 - 248
Target Start/End: Complemental strand, 897815 - 897676
Alignment:
Q  109 atatttggagttgtaaatttgaatgatgtttgatcttctaatattggtgaattcaaatatgagtgaagtctaaggaaagacaaatttggtagattcacaa 208  Q
    ||||||||| ||| |||| | ||||  |||| ||||||||||| | || |||| |||||||| ||||||||||| ||| |||||||||||| ||||||||    
T  897815 atatttggaattgcaaatctaaatggagtttaatcttctaatactagttaatttaaatatgaatgaagtctaagcaaaaacaaatttggtaaattcacaa 897716  T
Q  209 ttttttattctatacaattttacgacacttttcacaactt 248  Q
    ||  ||  ||||||  ||||| | |||||||| |||||||    
T  897715 ttcattggtctatattattttgcaacactttttacaactt 897676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 145 - 238
Target Start/End: Complemental strand, 51759074 - 51758982
Alignment:
Q  145 tctaatattggtgaattcaaatatgagtgaagtctaaggaaagacaaatttggtagattcacaattttttattctatacaattttacgacactt 238  Q
    |||||||||||| |||| |||||||| ||||||||||| |||||| ||||||||||||||| ||   |||| |||| ||||||||  |||||||    
T  51759074 tctaatattggttaattgaaatatgaatgaagtctaagcaaagac-aatttggtagattcaaaaaaatttagtctagacaattttgtgacactt 51758982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 193 - 249
Target Start/End: Original strand, 47694717 - 47694773
Alignment:
Q  193 tttggtagattcacaattttttattctatacaattttacgacacttttcacaacttc 249  Q
    ||||||||| ||||||||||||| |||| |||| ||| ||| |||||| ||||||||    
T  47694717 tttggtagactcacaattttttagtctagacaactttgcgatactttttacaacttc 47694773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0576 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: scaffold0576
Description:

Target: scaffold0576; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 145 - 199
Target Start/End: Complemental strand, 7022 - 6968
Alignment:
Q  145 tctaatattggtgaattcaaatatgagtgaagtctaaggaaagacaaatttggta 199  Q
    |||||||||||| ||||||||||||| ||||||||||| ||||||||||||||||    
T  7022 tctaatattggttaattcaaatatgaatgaagtctaagcaaagacaaatttggta 6968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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