View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17407_low_21 (Length: 262)
Name: NF17407_low_21
Description: NF17407
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17407_low_21 |
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Alignment Details
Target: chr3 (Bit Score: 241; Significance: 1e-133; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 1 - 241
Target Start/End: Complemental strand, 47712126 - 47711886
Alignment:
| Q |
1 |
atctcaaggaggatcagatgattaagaggatatttgtattcagtgacatggagtttgatcaagcatctgcaaactcttgggaaactgattaccaagcaat |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47712126 |
atctcaaggaggatcagatgattaagaggatatttgtattcagtgacatggagtttgatcaagcatctgcaaactcttgggaaactgattaccaagcaat |
47712027 |
T |
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| Q |
101 |
cactaggaagtatagagagaaagggtatggttctgctgtgcctcagatagttttttggaatctgagagactcgatggcgaccccagtgtcagccactcag |
200 |
Q |
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| T |
47712026 |
cactaggaagtatagagagaaagggtatggttctgctgtgcctcagatagttttttggaatctgagagactcgatggcgaccccagtgtcagccactcag |
47711927 |
T |
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| Q |
201 |
aaaggagtggcgctgttaagtggattttctaagaatctgct |
241 |
Q |
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| T |
47711926 |
aaaggagtggcgctgttaagtggattttctaagaatctgct |
47711886 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 169; Significance: 1e-90; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 169; E-Value: 1e-90
Query Start/End: Original strand, 1 - 241
Target Start/End: Complemental strand, 19795227 - 19794987
Alignment:
| Q |
1 |
atctcaaggaggatcagatgattaagaggatatttgtattcagtgacatggagtttgatcaagcatctgcaaactcttgggaaactgattaccaagcaat |
100 |
Q |
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||||||| ||||||||||||||||||||||| ||||| |||||||||||||| ||||||||||||||||||||||||||||| || ||||| ||||| || |
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| T |
19795227 |
atctcaaagaggatcagatgattaagaggatctttgtcttcagtgacatggaatttgatcaagcatctgcaaactcttgggagaccgattatcaagctat |
19795128 |
T |
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| Q |
101 |
cactaggaagtatagagagaaagggtatggttctgctgtgcctcagatagttttttggaatctgagagactcgatggcgaccccagtgtcagccactcag |
200 |
Q |
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| T |
19795127 |
tactaggaagtatagagaaaaagggtatggttctgctgtgcctcagatagttttttggaatctgagagactcgaaggccaccccggtgccatccactcag |
19795028 |
T |
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| Q |
201 |
aaaggagtggcgctgttaagtggattttctaagaatctgct |
241 |
Q |
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| T |
19795027 |
aaaggagtggcgctggtaagtgggttttcgaagaatctgct |
19794987 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 1 - 241
Target Start/End: Original strand, 19786360 - 19786600
Alignment:
| Q |
1 |
atctcaaggaggatcagatgattaagaggatatttgtattcagtgacatggagtttgatcaagcatctgcaaactcttgggaaactgattaccaagcaat |
100 |
Q |
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|
||||||||||||||||||||||||| ||||| || || ||||||||||||||||||||| |||| |||| ||| ||||||| || |||||||||||||| |
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| T |
19786360 |
atctcaaggaggatcagatgattaaaaggatcttcgttttcagtgacatggagtttgatgaagcgtctgtgaacccttgggagaccgattaccaagcaat |
19786459 |
T |
|
| Q |
101 |
cactaggaagtatagagagaaagggtatggttctgctgtgcctcagatagttttttggaatctgagagactcgatggcgaccccagtgtcagccactcag |
200 |
Q |
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| T |
19786460 |
cactaggaagtatagcgagaaagggtatggttctgttgtgcctcagatagttttttggaatctgagagactcgagggccaccccagtgcgtgctactcag |
19786559 |
T |
|
| Q |
201 |
aaaggagtggcgctgttaagtggattttctaagaatctgct |
241 |
Q |
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|||||||| |||||| | ||||| || |||||||||||||| |
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| T |
19786560 |
aaaggagttgcgctggtgagtggtttctctaagaatctgct |
19786600 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 150; Significance: 2e-79; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 150; E-Value: 2e-79
Query Start/End: Original strand, 1 - 238
Target Start/End: Complemental strand, 15834534 - 15834297
Alignment:
| Q |
1 |
atctcaaggaggatcagatgattaagaggatatttgtattcagtgacatggagtttgatcaagcatctgcaaactcttgggaaactgattaccaagcaat |
100 |
Q |
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|||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||| |||||||| |||||||| || | |||||||| || |
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| T |
15834534 |
atctgaaggaggatcagatgattaagaggatatttgtatttagtgacatggagtttgatcgagcgtctgcaaaatcttgggagaccggttaccaagttat |
15834435 |
T |
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| Q |
101 |
cactaggaagtatagagagaaagggtatggttctgctgtgcctcagatagttttttggaatctgagagactcgatggcgaccccagtgtcagccactcag |
200 |
Q |
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||||||||| | ||||||||||||||||||||||| | ||||||||||||||||||||||||||||||| ||||| || ||||| ||| || |||||||| |
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| T |
15834434 |
cactaggaaatttagagagaaagggtatggttctgttttgcctcagatagttttttggaatctgagagattcgatcgccaccccggtgccatccactcag |
15834335 |
T |
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| Q |
201 |
aaaggagtggcgctgttaagtggattttctaagaatct |
238 |
Q |
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||||||||||||||||||||||| ||||| |||||||| |
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| T |
15834334 |
aaaggagtggcgctgttaagtgggttttcgaagaatct |
15834297 |
T |
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