View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17407_low_27 (Length: 239)
Name: NF17407_low_27
Description: NF17407
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17407_low_27 |
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Alignment Details
Target: chr6 (Bit Score: 221; Significance: 1e-122; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 221; E-Value: 1e-122
Query Start/End: Original strand, 1 - 225
Target Start/End: Original strand, 805637 - 805861
Alignment:
| Q |
1 |
tattttatcatgctcttcacaggacatttgtagcatcttacaaccctgtcacaaagaagtagggtgaattaatcacctcggattaatctgagacacatga |
100 |
Q |
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| T |
805637 |
tattttatcatgctcttcacaggacatttgtagcatcttacaaccctgtcaaaaagaagtagggtgaattaatcacctcggattaatctgagacacatga |
805736 |
T |
|
| Q |
101 |
aattcttttagtgcttgttttggatgcaagctgtagtttcccaatgttgaagctataagtgtgttaaaaacttgctcacatgggcagagaacctcatgca |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
805737 |
aattcttttagtgcttgttttggatgcaagctgtagtttcccaatgttgaagctataagtgtgttaaaaacttgctcacatgggcagagaacctcatgca |
805836 |
T |
|
| Q |
201 |
gtagttataaaatttatgaacttac |
225 |
Q |
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||||||||||||||||||||||||| |
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| T |
805837 |
gtagttataaaatttatgaacttac |
805861 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 55; Significance: 1e-22; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 1 - 116
Target Start/End: Original strand, 36053856 - 36053975
Alignment:
| Q |
1 |
tattttatcatgctcttcacaggacatttgtagcatcttacaaccctgtcacaaagaagtagggt----gaattaatcacctcggattaatctgagacac |
96 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| | ||||| ||| ||||||||||||||||| ||| |||| ||| |
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| T |
36053856 |
tattttatcatgctcttcacaggacatttgtagcatcttacaaccctgtccgggaaaagtaaggtcaaataattaatcacctcggataaatgtgagtcac |
36053955 |
T |
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| Q |
97 |
atgaaattcttttagtgctt |
116 |
Q |
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| T |
36053956 |
aataaattcttttagtgctt |
36053975 |
T |
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