View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17407_low_29 (Length: 201)

Name: NF17407_low_29
Description: NF17407
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17407_low_29
NF17407_low_29
[»] chr8 (4 HSPs)
chr8 (9-182)||(14004083-14004256)
chr8 (9-182)||(5766548-5766721)
chr8 (69-170)||(17635611-17635712)
chr8 (69-170)||(17642890-17642991)
[»] chr4 (4 HSPs)
chr4 (13-167)||(8186317-8186471)
chr4 (110-170)||(1481684-1481744)
chr4 (66-158)||(661855-661947)
chr4 (66-166)||(55907634-55907734)
[»] chr6 (5 HSPs)
chr6 (87-170)||(7132323-7132406)
chr6 (87-170)||(7135246-7135329)
chr6 (87-170)||(7138169-7138252)
chr6 (19-127)||(6403528-6403636)
chr6 (66-170)||(8913375-8913479)
[»] chr2 (1 HSPs)
chr2 (66-166)||(1036570-1036670)
[»] chr1 (1 HSPs)
chr1 (67-151)||(7555196-7555280)


Alignment Details
Target: chr8 (Bit Score: 166; Significance: 5e-89; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 166; E-Value: 5e-89
Query Start/End: Original strand, 9 - 182
Target Start/End: Original strand, 14004083 - 14004256
Alignment:
Q  9 tagcaaaggaaaacaatcagcaatgagatggagatcagtgctattaagagaattaaggttggaacaaataagtgaggtcaaagttgtaatgttccgagag 108  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  14004083 tagcaaaggaaaacaatcagcaatgagatggagatcagtgctattaagagaattaaggttggaacaaataagtgaggtcaaagttgtaatgttctgagag 14004182  T
Q  109 aaagctcgcaaaccattagcaggaaggatgagttggttggaaagattgagcgatgtgagtttgaacattgggaa 182  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  14004183 aaagctcgcaaaccattagcaggaaggatgggttggttggaaagattgagcgatgtgagtttgaacattgggaa 14004256  T

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Target: chr8; HSP #2
Raw Score: 146; E-Value: 4e-77
Query Start/End: Original strand, 9 - 182
Target Start/End: Complemental strand, 5766721 - 5766548
Alignment:
Q  9 tagcaaaggaaaacaatcagcaatgagatggagatcagtgctattaagagaattaaggttggaacaaataagtgaggtcaaagttgtaatgttccgagag 108  Q
    |||||||||||||  |||||||||||| |||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||    
T  5766721 tagcaaaggaaaagtatcagcaatgaggtggatatcagtgctattaagagaaataaggttggaacaaataagtgaggtcaaagttgtaatgttctgagag 5766622  T
Q  109 aaagctcgcaaaccattagcaggaaggatgagttggttggaaagattgagcgatgtgagtttgaacattgggaa 182  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  5766621 aaagctcgcaaaccattagcaggaaggatgagttggttggaaagattgagcgatgtgagtttcaacattgggaa 5766548  T

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Target: chr8; HSP #3
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 69 - 170
Target Start/End: Complemental strand, 17635712 - 17635611
Alignment:
Q  69 ggaacaaataagtgaggtcaaagttgtaatgttccgagagaaagctcgcaaaccattagcaggaaggatgagttggttggaaagattgagcgatgtgagt 168  Q
    ||||||| | || ||||||||||||||||| ||||| ||||||||||| || |||||||  |||| | ||||||||||||| |||||||| ||| |||||    
T  17635712 ggaacaagtgagagaggtcaaagttgtaatattccgggagaaagctcgtaacccattagttggaatggtgagttggttggacagattgagtgatatgagt 17635613  T
Q  169 tt 170  Q
    ||    
T  17635612 tt 17635611  T

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Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 69 - 170
Target Start/End: Complemental strand, 17642991 - 17642890
Alignment:
Q  69 ggaacaaataagtgaggtcaaagttgtaatgttccgagagaaagctcgcaaaccattagcaggaaggatgagttggttggaaagattgagcgatgtgagt 168  Q
    ||||||| | || ||||||||||||||||| ||| | ||||||||| | || ||||| |  |||| | |||| |||||||| |||||||| |||||||||    
T  17642991 ggaacaagtgagagaggtcaaagttgtaatattctgggagaaagcttgtaacccattggtgggaatggtgagatggttggagagattgagtgatgtgagt 17642892  T
Q  169 tt 170  Q
    ||    
T  17642891 tt 17642890  T

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Target: chr4 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 13 - 167
Target Start/End: Complemental strand, 8186471 - 8186317
Alignment:
Q  13 aaaggaaaacaatcagcaatgagatggagatcagtgctattaagagaattaaggttggaacaaataagtgaggtcaaagttgtaatgttccgagagaaag 112  Q
    |||||||||||||| || |||||   ||  ||||||||||| | ||| | || |||||||||  | |||||||||||||||||||| || || |||| |     
T  8186471 aaaggaaaacaatcggcgatgaggaagatgtcagtgctattgatagattcaatgttggaacatgtgagtgaggtcaaagttgtaatatttcgggagagaa 8186372  T
Q  113 ctcgcaaaccattagcaggaaggatgagttggttggaaagattgagcgatgtgag 167  Q
    ||||||| ||||| ||||||| | || ||| ||| || |||||||| ||||||||    
T  8186371 ctcgcaatccatttgcaggaatggtgggtttgttagagagattgagtgatgtgag 8186317  T

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Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.000000000004
Query Start/End: Original strand, 110 - 170
Target Start/End: Original strand, 1481684 - 1481744
Alignment:
Q  110 aagctcgcaaaccattagcaggaaggatgagttggttggaaagattgagcgatgtgagttt 170  Q
    |||||||||| |||||||| |||||| |||||||||| || | ||||||||||||||||||    
T  1481684 aagctcgcaagccattagcgggaaggttgagttggtttgagatattgagcgatgtgagttt 1481744  T

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Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 66 - 158
Target Start/End: Original strand, 661855 - 661947
Alignment:
Q  66 gttggaacaaataagtgaggtcaaagttgtaatgttccgagagaaagctcgcaaaccattagcaggaaggatgagttggttggaaagattgag 158  Q
    |||| ||||||| || ||||| ||||||||||| |   | ||||||||||||||||||||||| |||| | ||  ||||||||| ||||||||    
T  661855 gttgtaacaaatgagagaggttaaagttgtaatatattgggagaaagctcgcaaaccattagcgggaatggtggtttggttggagagattgag 661947  T

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Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 66 - 166
Target Start/End: Complemental strand, 55907734 - 55907634
Alignment:
Q  66 gttggaacaaataagtgaggtcaaagttgtaatgttccgagagaaagctcgcaaaccattagcaggaaggatgagttggttggaaagattgagcgatgtg 165  Q
    |||||||||||| || ||  ||||||||||||| ||  | ||||||||||| || ||| |||| || | |||  |||||||||| ||||||||||| |||    
T  55907734 gttggaacaaatgagagaattcaaagttgtaatattttgggagaaagctcgtaagccagtagcggggatgataggttggttggagagattgagcgaagtg 55907635  T
Q  166 a 166  Q
    |    
T  55907634 a 55907634  T

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Target: chr6 (Bit Score: 36; Significance: 0.00000000002; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 87 - 170
Target Start/End: Original strand, 7132323 - 7132406
Alignment:
Q  87 caaagttgtaatgttccgagagaaagctcgcaaaccattagcaggaaggatgagttggttggaaagattgagcgatgtgagttt 170  Q
    |||||||||||||||  | |||||||||||||| ||||| ||||||| | || |||||||||| | | | ||||||||||||||    
T  7132323 caaagttgtaatgttttgggagaaagctcgcaacccatttgcaggaaaggtgtgttggttggagatactaagcgatgtgagttt 7132406  T

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Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 87 - 170
Target Start/End: Original strand, 7135246 - 7135329
Alignment:
Q  87 caaagttgtaatgttccgagagaaagctcgcaaaccattagcaggaaggatgagttggttggaaagattgagcgatgtgagttt 170  Q
    |||||||||||||||  | |||||||||||||| ||||| ||||||| | || |||||||||| | | | ||||||||||||||    
T  7135246 caaagttgtaatgttttgggagaaagctcgcaacccatttgcaggaaaggtgtgttggttggagatactaagcgatgtgagttt 7135329  T

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Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 87 - 170
Target Start/End: Original strand, 7138169 - 7138252
Alignment:
Q  87 caaagttgtaatgttccgagagaaagctcgcaaaccattagcaggaaggatgagttggttggaaagattgagcgatgtgagttt 170  Q
    |||||||||||||||  | |||||||||||||| ||||| ||||||| | || |||||||||| | | | ||||||||||||||    
T  7138169 caaagttgtaatgttttgggagaaagctcgcaacccatttgcaggaaaggtgtgttggttggagatactaagcgatgtgagttt 7138252  T

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Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 19 - 127
Target Start/End: Original strand, 6403528 - 6403636
Alignment:
Q  19 aaacaatcagcaatgagatggagatcagtgctattaagagaattaaggttggaacaaataagtgaggtcaaagttgtaatgttccgagagaaagctcgca 118  Q
    |||||||| ||||||||   ||||| || |||||||||||||| || || |||||||  ||| ||||||||||| || |  || || |||||||||||||    
T  6403528 aaacaatcggcaatgagtaagagatgagagctattaagagaatcaatgtcggaacaatcaagagaggtcaaagtagtgacctttcgggagaaagctcgca 6403627  T
Q  119 aaccattag 127  Q
    | |||||||    
T  6403628 acccattag 6403636  T

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Target: chr6; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 66 - 170
Target Start/End: Complemental strand, 8913479 - 8913375
Alignment:
Q  66 gttggaacaaataagtgaggtcaaagttgtaatgttccgagagaaagctcgcaaaccattagcaggaaggatgagttggttggaaagattgagcgatgtg 165  Q
    |||||||||| | || ||||||||||||||||| ||   ||| ||| || |||| ||||||||||||| | |   ||||||||| | |||||||||||||    
T  8913479 gttggaacaattgagagaggtcaaagttgtaatctttttagataaaactagcaacccattagcaggaaaggtccattggttggagatattgagcgatgtg 8913380  T
Q  166 agttt 170  Q
    |||||    
T  8913379 agttt 8913375  T

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Target: chr2 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 66 - 166
Target Start/End: Complemental strand, 1036670 - 1036570
Alignment:
Q  66 gttggaacaaataagtgaggtcaaagttgtaatgttccgagagaaagctcgcaaaccattagcaggaaggatgagttggttggaaagattgagcgatgtg 165  Q
    |||||||||||| || || |||||||||||||| ||  | ||||||||||| || ||| |||| || | |||  |||||||||| ||||||||||| |||    
T  1036670 gttggaacaaatgagagaagtcaaagttgtaatattttgggagaaagctcgtaagccagtagcggggatgataggttggttggagagattgagcgaagtg 1036571  T
Q  166 a 166  Q
    |    
T  1036570 a 1036570  T

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Target: chr1 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 67 - 151
Target Start/End: Original strand, 7555196 - 7555280
Alignment:
Q  67 ttggaacaaataagtgaggtcaaagttgtaatgttccgagagaaagctcgcaaaccattagcaggaaggatgagttggttggaaa 151  Q
    ||||||||| | |||||||| ||||||||||| ||  | |||||||||||||| ||| | ||||| | | || ||||||||||||    
T  7555196 ttggaacaagtgagtgaggttaaagttgtaatattttgggagaaagctcgcaatccaattgcagggatggtgggttggttggaaa 7555280  T

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