View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17407_low_7 (Length: 469)
Name: NF17407_low_7
Description: NF17407
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17407_low_7 |
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Alignment Details
Target: chr4 (Bit Score: 423; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 423; E-Value: 0
Query Start/End: Original strand, 1 - 467
Target Start/End: Original strand, 24186737 - 24187203
Alignment:
| Q |
1 |
tgacacagacacaaccacaactacaactacgcatacaccgtcccaagtctcagcatctaccagcactactcatgcaccatctcaaatccctgtatctttc |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||| |
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| T |
24186737 |
tgacacagacacaaccacaactacaactacgcatacaccgtcccaagtctcagcatccaccagcactactcacgcaccatctcaaatccctgtatctttc |
24186836 |
T |
|
| Q |
101 |
aacgctcaagaaggtaatttaccgctattccattttgtatcatctgannnnnnnncatatacatcagttttgtctctacataagccaatgtttcatttga |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
24186837 |
aacgctcaagaaggtaatttaccgctattccattttgtatcatctgattttttttcatatacataagttttgtctctacataagccaatgtttcatttga |
24186936 |
T |
|
| Q |
201 |
tcgttctaaatatgcagctgttgaggtagaaaaccatggcaggattcttcaggcaaattgaaagtccctatgatgcgtttgctgcatttttgtgaatgta |
300 |
Q |
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|
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24186937 |
tcgttctaaatatgcagctgttgaggtagaaaaccatgacaggattcttcaggcaaattgaaagtccctatgatgcgtttgctgcatttttgtgaatgta |
24187036 |
T |
|
| Q |
301 |
ttcggtttctgttcaaccttgttgtatatgtaccccataattcagctgaaaatatagtttcccttaaatttgtaaaattaaattgtatctaataagttgt |
400 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24187037 |
ttcggtttctgttcaaccttgttgtatatgtaccccataattcagctgaaaatatagtttcccttaaatttgtaaaattaaattgtatctaataagttgt |
24187136 |
T |
|
| Q |
401 |
gttcttcgtgtaatgaactgaaggatgatgaattgtatatttgtataatattgcatatactagtatt |
467 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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|
| T |
24187137 |
gttcttcgtgtaatgaactgaaggatgatgaattgtatatttgtataatattgcatatactggtatt |
24187203 |
T |
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