View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17408_high_13 (Length: 529)
Name: NF17408_high_13
Description: NF17408
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17408_high_13 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 307; Significance: 1e-173; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 307; E-Value: 1e-173
Query Start/End: Original strand, 124 - 508
Target Start/End: Original strand, 32350144 - 32350528
Alignment:
| Q |
124 |
attaattattcaaacttaacatcgagatagatcaaactttctccactttaatttctttgtacaaaaacatctcctgaacatcaaataccattctcgggaa |
223 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32350144 |
attaattattcaaacttaacatcgagatagatcaaactttctcctctttaatttctttgtacaaaaacatctcctgaacatcaaataccattctcgggaa |
32350243 |
T |
|
| Q |
224 |
gtttatactcataataataatcaaaatgtttatcatatgccaatgagatc-aaaggc-ccctttaataaatatgagtcatctttcgagtaggttcgtctg |
321 |
Q |
| |
|
|||||||||||||||| ||||||| ||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32350244 |
gtttatactcataatagtaatcaacatgtttatcatatgccaatgagatcaaaaggctccctttaataaatatgagtcatctttcgagtaggttcgtctg |
32350343 |
T |
|
| Q |
322 |
ataaacnnnnnnnnntatgattgagatgattcttcaatccaattaatgtcatttgaggacttgataacatttcaaacggacttgtccattgatcgaattg |
421 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
32350344 |
ataaac--aaaaaaatatgattgagatgattcttcaatccaattaatgtcatttgagaacttgataacatttcaaacgcacttgtccattgatcgaattg |
32350441 |
T |
|
| Q |
422 |
aacaacgaattttagcaaaggagaagaaggagaagacacgatgaaaatgataagagagaaatgtattagtaaaccagagagagtaat |
508 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||| |||||||||||| |
|
|
| T |
32350442 |
aacaacgaattttagcaaaggagaagaaggagaagacacgatgaaaacgataagagagaaatgtattaataaacaagagagagtaat |
32350528 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 18 - 130
Target Start/End: Original strand, 32349299 - 32349413
Alignment:
| Q |
18 |
gtaagttacgataattttgacaaaagctacattttaaaacttcaaacaatggtgttatcggatatttgttaaacacaacataacataataat--agtctc |
115 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||| |||||| |
|
|
| T |
32349299 |
gtaagttacgataattttcacaaaagctacattttaaaacttcaaataatggtgttatcggatatttgttaaacacaacataacataacaattgagtctc |
32349398 |
T |
|
| Q |
116 |
tcacatagattaatt |
130 |
Q |
| |
|
||||||||||||||| |
|
|
| T |
32349399 |
tcacatagattaatt |
32349413 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 223 - 311
Target Start/End: Complemental strand, 41334516 - 41334427
Alignment:
| Q |
223 |
agtttatactcataataataatcaaaatgtttatcatatgccaatgagatcaaaggc-ccctttaataaatatgagtcatctttcgagta |
311 |
Q |
| |
|
|||||||| ||| ||| |||||||||||||||| | |||||||||||||||||||| ||| |||||||||||||||| ||||| |||| |
|
|
| T |
41334516 |
agtttatattcacgatagtaatcaaaatgtttattagatgccaatgagatcaaaggctccccataataaatatgagtcacctttcaagta |
41334427 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 223 - 313
Target Start/End: Complemental strand, 41313642 - 41313551
Alignment:
| Q |
223 |
agtttatactcataataataatcaaaatgtttatcatatgccaatgagatcaaaggc-ccctttaataaatatgagtcatctttcgagtagg |
313 |
Q |
| |
|
|||||||| |||| |||||||||||||| ||||||| ||||||| ||||||||| || || ||| |||||||||||| |||||||||||| |
|
|
| T |
41313642 |
agtttatattcatgataataatcaaaatatttatcagatgccaacgagatcaaaagctccgcataacaaatatgagtcacctttcgagtagg |
41313551 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 38; Significance: 0.000000000003; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 378 - 448
Target Start/End: Complemental strand, 36513136 - 36513064
Alignment:
| Q |
378 |
ggacttgataacatttcaaacggacttgtcc--attgatcgaattgaacaacgaattttagcaaaggagaaga |
448 |
Q |
| |
|
|||||| ||||||||||| | |||||||||| |||||| |||||||||| ||||||||||||||||||||| |
|
|
| T |
36513136 |
ggacttaataacatttcagatggacttgtccccattgattaaattgaacaatgaattttagcaaaggagaaga |
36513064 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 406 - 466
Target Start/End: Complemental strand, 9772116 - 9772057
Alignment:
| Q |
406 |
tccattgatcgaattgaacaacgaattttagcaaaggagaagaaggagaagacacgatgaa |
466 |
Q |
| |
|
|||||||||| ||||||| || |||| |||||||||||||||| ||||||||| |||||| |
|
|
| T |
9772116 |
tccattgatcaaattgaa-aatgaatactagcaaaggagaagaatgagaagacatgatgaa |
9772057 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University